Browse Element(s) Details


OsAffx.11831.1.S1_at

Description tigr:9629.m07188
TID=OsAffx.11831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7266011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72620OsAffx.24015.1.S1_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.3.S1_x_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.1.S1_at3/111+42461140..42462786hypothetical protein
LOC_Os01g72630Os.34199.1.S1_at11/111+42465498..42469884expressed protein
LOC_Os01g72630Os.34199.2.S1_s_at11/111+42465498..42469884expressed protein
LOC_Os01g72650Os.8818.2.S1_x_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72650Os.8818.1.S1_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72660OsAffx.11831.1.S1_at11/111+42487651..42488127hypothetical protein
LOC_Os01g72670Os.38326.1.A1_a_at11/111+42489440..42493310expressed protein
LOC_Os01g72680OsAffx.11832.1.S1_at11/111+42496260..42499052NB-ARC domain containing protein
LOC_Os01g72690Os.7395.1.S1_s_at11/111+42504684..42510567ATP-NAD kinase family protein, putative, expressed
LOC_Os01g72700Os.43021.1.S1_at11/111+42511088..42514530leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11831.1.S1_at--4--5671Chr01:42487699..42487723 (25 bp)
GACATCCTTTTTCTCGAAATCCCCG
LOC_Os01g72660
OsAffx.11831.1.S1_at--1003--10192Chr01:42487708..42487732 (25 bp)
TTTCTCGAAATCCCCGGGCAGGGAG
LOC_Os01g72660
OsAffx.11831.1.S1_at--789--2451Chr01:42487740..42487764 (25 bp)
AACACTAGGGCTTCAGGGGGATTTG
LOC_Os01g72660
OsAffx.11831.1.S1_at--212--9252Chr01:42487772..42487796 (25 bp)
TCCTCGGCGGCCAAATCGGCTTGAA
LOC_Os01g72660
OsAffx.11831.1.S1_at--250--8432Chr01:42487780..42487804 (25 bp)
GGCCAAATCGGCTTGAACCGGAACG
LOC_Os01g72660
OsAffx.11831.1.S1_at--16--2631Chr01:42487795..42487819 (25 bp)
AACCGGAACGGATTCAGGCTGAGCA
LOC_Os01g72660
OsAffx.11831.1.S1_at--868--9631Chr01:42487808..42487832 (25 bp)
TCAGGCTGAGCAGGGAACACTCCAT
LOC_Os01g72660
OsAffx.11831.1.S1_at--784--6551Chr01:42487888..42487912 (25 bp)
GATTCAGGCCAAACCGCTCACCTTC
LOC_Os01g72660
OsAffx.11831.1.S1_at--322--9671Chr01:42487905..42487929 (25 bp)
TCACCTTCAACACGCGGGCGCGCAA
LOC_Os01g72660
OsAffx.11831.1.S1_at--122--6191Chr01:42487968..42487992 (25 bp)
GAGGACGTCGCCCCATGCCATGCTA
LOC_Os01g72660
OsAffx.11831.1.S1_at--901--4531Chr01:42488041..42488065 (25 bp)
GCCCGCTCTGCATCCGCAAGGAGGA
LOC_Os01g72660
Target Sequence 
GACATCCTTTTTCTCGAAATCCCCGGGCAGGGAGGAGGGGAAACACTAGGGCTTCAGGGGGATTTGGGCGCGGTCCTCGG
CGGCCAAATCGGCTTGAACCGGAACGGATTCAGGCTGAGCAGGGAACACTCCATGAAGCAGCCACCAACGGCGGCGGCGT
CGTCGGGCGCTCAGTCGCTCACCCCGGCCGATTCAGGCCAAACCGCTCACCTTCAACACGCGGGCGCGCAAGGAGGTCTT
CGTCGGGAAGCTTCAGGTGGAGGTCGACGGAGGACGTCGCCCCATGCCATGCTAGGAGCTCGCTGGTGGCAGTCATGGTG
CAGGCTCTTGCGCACCTTGAGCGCCCGCTCTGCATCCGCAAGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis