Browse Element(s) Details


OsAffx.11876.1.S1_at

Description tigr:9630.m00246
TID=OsAffx.11876.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to small nuclear ribonucleoprotein homolog (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0344010/11Sm protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03390OsAffx.24081.1.S1_at11/112+1375705..1376318hypothetical protein
LOC_Os02g03400Os.53067.1.S1_at11/112+1379250..1382389Microtubule associated protein containing protein, expressed
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed
LOC_Os02g03420Os.54336.1.S1_at11/112+1394865..1397141PPR868-14, putative, expressed
LOC_Os02g03430Os.51630.1.A1_at11/112+1397698..1398983expressed protein
LOC_Os02g03440OsAffx.11876.1.S1_at10/112+1399613..1401222Sm protein, expressed
LOC_Os02g03450Os.5994.1.A1_at10/112+1402582..1404558Golgi SNARE 12 protein, putative, expressed
LOC_Os02g03460OsAffx.11877.1.S1_at11/112+1406098..1409346phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g03470Os.54187.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.27739.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.54187.1.A1_x_at11/112+1412107..1416005expressed protein
LOC_Os02g03480OsAffx.24082.1.S1_s_at11/112+1416610..1417705expressed protein
LOC_Os02g03490OsAffx.24083.1.S1_x_at11/112+1420014..1420997expressed protein
LOC_Os02g03490Os.10395.1.S1_s_at9/112+1420014..1420997expressed protein
LOC_Os02g03500Os.10395.1.S1_s_at9/112+1423747..1424390expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11876.1.S1_at--669--7591NONE
GGGCAGAATCATCATGTATGTCAAC
NONE
OsAffx.11876.1.S1_at--1093--6911Chr02:1400136..1400160 (25 bp)
GTATGTCAACTCTGTACTGTATGTT
LOC_Os02g03440
OsAffx.11876.1.S1_at--145--7011Chr02:1400123..1400147 (25 bp)
GTACTGTATGTTGTATTTATTCACA
LOC_Os02g03440
OsAffx.11876.1.S1_at--1130--171Chr02:1400109..1400133 (25 bp)
ATTTATTCACAATATCTCATGGGAT
LOC_Os02g03440
OsAffx.11876.1.S1_at--573--7651Chr02:1400089..1400113 (25 bp)
GGGATAGGACAGATGACAAAACTTT
LOC_Os02g03440
OsAffx.11876.1.S1_at--24--10511Chr02:1400057..1400081 (25 bp)
TTAATTCTTCTCACCCGTGAGTTGC
LOC_Os02g03440
OsAffx.11876.1.S1_at--720--3351Chr02:1400046..1400070 (25 bp)
CACCCGTGAGTTGCTATTCTTTACA
LOC_Os02g03440
OsAffx.11876.1.S1_at--860--2031Chr02:1400021..1400045 (25 bp)
ACTATAATTGTTGTGTCTGTGACCT
LOC_Os02g03440
OsAffx.11876.1.S1_at--74--3171Chr02:1400016..1400040 (25 bp)
AATTGTTGTGTCTGTGACCTTGCAC
LOC_Os02g03440
OsAffx.11876.1.S1_at--556--8671Chr02:1400010..1400034 (25 bp)
TGTGTCTGTGACCTTGCACGTGCAT
LOC_Os02g03440
OsAffx.11876.1.S1_at--856--1731Chr02:1400003..1400024 (22 bp)
ACCTTGCACGTGCATGCTAAGGGCT
LOC_Os02g03440
Target Sequence 
GGGCAGAATCATCATGTATGTCAACTCTGTACTGTATGTTGTATTTATTCACAATATCTCATGGGATAGGACAGATGACA
AAACTTTTGAGGATTTAATTCTTCTCACCCGTGAGTTGCTATTCTTTACAACTATAATTGTTGTGTCTGTGACCTTGCAC
GTGCATGCTAAGGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis