Browse Element(s) Details


OsAffx.11936.1.S1_at

Description tigr:9630.m00762
TID=OsAffx.11936.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to SBP-domain protein 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0807011/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08030OsAffx.24159.1.S1_at11/112+4220947..4223596Possible apospory-associated protein C, putative
LOC_Os02g08040NANA2+4234866..4235081hypothetical protein
LOC_Os02g08050NANA2+4239050..4240507hypothetical protein
LOC_Os02g08060NANA2+4245116..4245478hypothetical protein
LOC_Os02g08070OsAffx.11936.1.S1_at11/112+4247469..4251022SBP domain containing protein, expressed
LOC_Os02g08080Os.54137.1.S1_at11/112+4264386..4268837expressed protein
LOC_Os02g08090Os.46427.1.A1_s_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090OsAffx.2545.1.S1_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090Os.36764.1.S1_x_at9/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009554biological_processmegasporogenesis
GO:0009556biological_processmicrosporogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11936.1.S1_at--977--4471Chr02:4249589..4249613 (25 bp)
GCCGGCGGCCAATCGTCCAAGGACT
LOC_Os02g08070
OsAffx.11936.1.S1_at--1071--1411Chr02:4249635..4249659 (25 bp)
AGAAAGGGACTGACGCCAGCATCGC
LOC_Os02g08070
OsAffx.11936.1.S1_at--695--7631Chr02:4249640..4249664 (25 bp)
GGGACTGACGCCAGCATCGCTAGCT
LOC_Os02g08070
OsAffx.11936.1.S1_at--1057--1711Chr02:4249670..4249691 (22 bp)
ACCAGCTGTGACCACCACAAGGCAG
LOC_Os02g08070
OsAffx.11936.1.S1_at--730--2931Chr02:4250564..4250585 (22 bp)
AAGGCAGCTGCGAGCACCACGACGG
LOC_Os02g08070
OsAffx.11936.1.S1_at--729--8231Chr02:4250738..4250762 (25 bp)
GGCAACGTCCTGATGATGCAGCAGC
LOC_Os02g08070
OsAffx.11936.1.S1_at--1093--471Chr02:4250835..4250859 (25 bp)
ATCTGATGAGATCTCTCGCGCGGCA
LOC_Os02g08070
OsAffx.11936.1.S1_at--1119--1531Chr02:4250868..4250892 (25 bp)
AGCATCGCCATAGCAGCGGCTGCAG
LOC_Os02g08070
OsAffx.11936.1.S1_at--214--2211Chr02:4250934..4250958 (25 bp)
ACAACATACTGTCGTGCTCGTCGGC
LOC_Os02g08070
OsAffx.11936.1.S1_at--252--9411Chr02:4250951..4250975 (25 bp)
TCGTCGGCGTCGGACCAGCAGAACA
LOC_Os02g08070
OsAffx.11936.1.S1_at--934--3931Chr02:4250955..4250979 (25 bp)
CGGCGTCGGACCAGCAGAACAGCAG
LOC_Os02g08070
Target Sequence 
GCCGGCGGCCAATCGTCCAAGGACTCGCCGCCGCCGCCGCCGTCGAAGAAAGGGACTGACGCCAGCATCGCTAGCTCCTA
CACCAGCTGTGACCACCACAAGGCAGCTGCGAGCACCACGACGGCCAGCGGCGTGAGCTGCCTGCAGGAGCTTGCAGACC
ACCACGACGTCGGCGGCGGCCATCAGGCAGCCATGGCGGCGGCGCCGCCGCCGACGCTGTCCCTGGCCGCGCTGCCGCCG
CAGGAGGAGGACGACGAGGACGAAGACGGCGGCCTCGGCAACGTCCTGATGATGCAGCAGCACCATCAACGGCGGCGACT
GCAACACGACGGCGACGGCGACGACGATGTCGCCGCCGCCGCCGCCCACCACCATCTGATGAGATCTCTCGCGCGGCAGC
AGCAGCAGCATCGCCATAGCAGCGGCTGCAGCAACAACAACGACGGCGACGACGACGACCACAACAACAACAACAACATA
CTGTCGTGCTCGTCGGCGTCGGACCAGCAGAACAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis