Browse Element(s) Details


OsAffx.11944.1.S1_at

Description tigr:9630.m00818
TID=OsAffx.11944.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0907011/11zinc-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08540Os.20642.1.S1_at10/112+4616844..4622097expressed protein
LOC_Os02g08544Os.1983.1.S1_at11/112+4625422..4628855Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os02g09050OsAffx.11943.1.S1_s_at8/112+4629504..4630087expressed protein
LOC_Os02g09060Os.17743.1.S1_at10/112+4630335..4634546Zn-finger in ubiquitin-hydrolases and other protein, expressed
LOC_Os02g09070OsAffx.11944.1.S1_at11/112+4640149..4641458zinc-binding protein, putative, expressed
LOC_Os02g09080OsAffx.24169.1.S1_x_at11/112+4650572..4653980expressed protein
LOC_Os02g09090NANA2+4656067..4656414hypothetical protein
LOC_Os02g09100OsAffx.2548.1.S1_at11/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09100OsAffx.14016.1.S1_at1/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11944.1.S1_at--234--1231Chr02:4641394..4641418 (25 bp)
AGTTCTTCATAGCATGCTCTTTCCA
LOC_Os02g09070
OsAffx.11944.1.S1_at--598--2751Chr02:4641347..4641371 (25 bp)
AAGAACATCTGTTGCCTTGACTGCT
LOC_Os02g09070
OsAffx.11944.1.S1_at--703--9931Chr02:4641257..4641281 (25 bp)
TACGTCTACCATGATGTTGTCCGGC
LOC_Os02g09070
OsAffx.11944.1.S1_at--572--1611Chr02:4641217..4641241 (25 bp)
AGCTGATCGATTGCTCCAGTGTTCA
LOC_Os02g09070
OsAffx.11944.1.S1_at--149--5571Chr02:4640416..4640440 (25 bp)
GAAAGACCTGTCAGCATACTTGCGT
LOC_Os02g09070
OsAffx.11944.1.S1_at--470--10851Chr02:4640372..4640396 (25 bp)
TTGGTCCAGATTTCTTCATTCCTCA
LOC_Os02g09070
OsAffx.11944.1.S1_at--156--1811Chr02:4640319..4640343 (25 bp)
ACCCTTGTTGATGTTGACGAGCCCA
LOC_Os02g09070
OsAffx.11944.1.S1_at--1024--1651Chr02:4640300..4640324 (25 bp)
AGCCCATGGGATCATCAGACTCAGA
LOC_Os02g09070
OsAffx.11944.1.S1_at--876--8891Chr02:4640270..4640294 (25 bp)
TGAGTGCACCATGCCCAAATTTTGT
LOC_Os02g09070
OsAffx.11944.1.S1_at--1030--8091Chr02:4640229..4640253 (25 bp)
GGACCATATATCTGTGCACGATCTG
LOC_Os02g09070
OsAffx.11944.1.S1_at--1002--5091Chr02:4640214..4640238 (25 bp)
GCACGATCTGCAAACCGAGTTTCTG
LOC_Os02g09070
Target Sequence 
AGTTCTTCATAGCATGCTCTTTCCATGAGCATGCGAAGAAGAATGAGAAGAACATCTGTTGCCTTGACTGCTGCACCAGC
ATCTGCCCACACTGTGTGGCAGCACACCGTGTGCACAGGCTACTGCAGGTGCGGCGCTACGTCTACCATGATGTTGTCCG
GCTGGAGGACCTTGAGAAGCTGATCGATTGCTCCAGTGTTCAGGTGGAATATATATTACGGCAAAAGAAAGACCTGTCAG
CATACTTGCGTCCATGCAAGACCTTGCAGCTTGGTCCAGATTTCTTCATTCCTCATGATGCTGATGATGAGACAACGCAC
TCAACCCTTGTTGATGTTGACGAGCCCATGGGATCATCAGACTCAGAGAATTTGAGTGCACCATGCCCAAATTTTGTCCG
AAAGAAGCGGAGTGGACCATATATCTGTGCACGATCTGCAAACCGAGTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis