Browse Element(s) Details


OsAffx.1198.1.S1_at

Description gb:NM_189137.1
DB_XREF= gi:34905357
GEN=OJ1126_G08.4
TID=OsAffx.1198.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1126_G08.4 (OJ1126_G08.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3116011/11retrotransposon protein, putative, unclassified
LOC_Os11g251404/11hypothetical protein
LOC_Os04g075203/11hypothetical protein
LOC_Os05g406602/11hypothetical protein
LOC_Os03g265901/11expressed protein
LOC_Os04g072691/11
LOC_Os06g149991/11
LOC_Os07g248001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g262301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g257501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31110Os.15474.1.S1_x_at11/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31110Os.43143.1.S1_at11/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31110Os.48257.1.A1_at11/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31110OsAffx.31445.1.S1_x_at2/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31120NANA1+17347843..17350482hypothetical protein
LOC_Os01g31124NANA1+17351577..17352478hypothetical protein
LOC_Os01g31130OsAffx.7695.1.S1_at2/111+17353329..17356260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31140OsAffx.23459.1.S1_at11/111+17360574..17360882hypothetical protein
LOC_Os01g31140OsAffx.23459.1.S1_x_at11/111+17360574..17360882hypothetical protein
LOC_Os01g31150OsAffx.31869.1.S1_at2/111+17362682..17364082retrotransposon protein, putative, unclassified
LOC_Os01g31150OsAffx.31869.5.S1_x_at1/111+17362682..17364082retrotransposon protein, putative, unclassified
LOC_Os01g31160OsAffx.1198.1.S1_at11/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160Os.38751.1.A1_at2/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160OsAffx.28492.1.S1_at1/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160Os.49802.1.S2_at1/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160OsAffx.30280.1.S1_x_at1/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31170NANA1+17370713..17371162hypothetical protein
LOC_Os01g31180NANA1+17372372..17374191retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31190NANA1+17381361..17385224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31200NANA1+17386130..17388895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31210OsAffx.23460.1.S1_at8/111+17391926..17392381hypothetical protein
LOC_Os01g31220Os.6438.1.S1_a_at11/111+17393803..17397678expressed protein
LOC_Os01g31220Os.6438.2.S1_x_at11/111+17393803..17397678expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1198.1.S1_at--387--3631Chr01:17365140..17365164 (25 bp)
CTTGCGATCTCGACGGTGGCGACAG
LOC_Os01g31160
OsAffx.1198.1.S1_at--341--4671Chr01:17365086..17365110 (25 bp)
GCGGTGTGGCTGGATCGACGATGAT
LOC_Os01g31160
OsAffx.1198.1.S1_at--1063--4572Chr07:12995787..12995811 (25 bp)
GCGCTCCGATGATCTGCGGCGGAAA
NONE
OsAffx.1198.1.S1_at--570--5811Chr01:17364938..17364962 (25 bp)
GACCGAAGCGACAGCGGGACCGACT
LOC_Os01g31160
OsAffx.1198.1.S1_at--1047--2131Chr01:17364928..17364952 (25 bp)
ACAGCGGGACCGACTGGAGACCCGC
LOC_Os01g31160
OsAffx.1198.1.S1_at--638--9511Chr01:17364795..17364819 (25 bp)
TCTAGGTGTGTCGATGGAGGCCCAC
LOC_Os01g31160
OsAffx.1198.1.S1_at--1048--6371Chr01:17364767..17364791 (25 bp)
GATCGGCGCCGAGAAGGAAAGCTAT
LOC_Os01g31160
OsAffx.1198.1.S1_at--519--40518Chr11:14597061..14597085 (25 bp)
CGATCCGAATCGAGCTCAAATCCGT
NONE
OsAffx.1198.1.S1_at--311--5257Chr03:13400536..13400560 (25 bp)
GAATCGAGCTCAAATCCGTCGGTTT
NONE
OsAffx.1198.1.S1_at--319--4837Chr03:13400543..13400567 (25 bp)
GCTCAAATCCGTCGGTTTCCAAACG
NONE
OsAffx.1198.1.S1_at--618--63938Chr12:18516437..18516461 (25 bp)
GATCGAGGAGATTATTTCCCCTCAA
NONE
Target Sequence 
CTTGCGATCTCGACGGTGGCGACAGCGACCGAAGGCGGCGGCTGAGACGGCGGCGCGGTGTGGCTGGATCGACGATGATG
GTGGAGAGCTTCGAGTCGACGGTGCCGGCGGCGCTCCGATGATCTGCGGCGGAAACGGAGGACGGGACGAGGACGGCGAC
GACATCGCGATGCTGATGAAGGAGACGGCGACCGACGGCGATGACCGAAGCGACAGCGGGACCGACTGGAGACCCGCCGG
CGGCGGCGATACAAAGAACCACGCGGAGGCGACGCTAGAGAAGGCGGCAGTCGAAGGTGGAGATGGTGATGCAGAGAGGA
GGTCCCGGAGGTCCTTCTATAGGGGTCTAGGTGTGTCGATGGAGGCCCACGGCGATCGGCGCCGAGAAGGAAAGCTATGG
TTGGAGGAAGAAAAATCGATCCGAATCGAGCTCAAATCCGTCGGTTTCCAAACGAAATTAGCCGAAGTTTCCAAAAGAGA
AAAGGAAGAGGAGATCGAGGAGATTATTTCCCCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis