Browse Element(s) Details


OsAffx.11994.1.S1_at

Description tigr:9630.m01085
TID=OsAffx.11994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1200011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11960OsAffx.11993.1.S1_at11/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_s_at10/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_at2/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11970Os.10627.1.S1_a_at11/112+6205390..6207340expressed protein
LOC_Os02g11980OsAffx.24926.1.S1_x_at11/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11980OsAffx.24926.2.S1_at2/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11990OsAffx.24202.1.S1_at10/112+6215998..6219187hypothetical protein
LOC_Os02g12000OsAffx.11994.1.S1_at11/112+6222957..6223378hypothetical protein
LOC_Os02g12010OsAffx.24926.2.S1_at11/112+6228456..6231985Leucine Rich Repeat family protein
LOC_Os02g12010OsAffx.24926.1.S1_x_at6/112+6228456..6231985Leucine Rich Repeat family protein
LOC_Os02g12020OsAffx.24203.1.S1_at11/112+6236706..6237184hypothetical protein
LOC_Os02g12030OsAffx.24926.1.S1_x_at11/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12030OsAffx.24926.3.S1_at1/112+6247083..6250599Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11994.1.S1_at--557--772Chr08:7312310..7312329 (20 bp)
ATGGGATACCAGGAAAACGGCGGCA
NONE
OsAffx.11994.1.S1_at--802--8631Chr02:6223161..6223185 (25 bp)
TGGGATACCAGGAAAACGGCGGCAT
LOC_Os02g12000
OsAffx.11994.1.S1_at--908--7651Chr02:6223160..6223184 (25 bp)
GGGATACCAGGAAAACGGCGGCATC
LOC_Os02g12000
OsAffx.11994.1.S1_at--305--7931Chr02:6223159..6223183 (25 bp)
GGATACCAGGAAAACGGCGGCATCG
LOC_Os02g12000
OsAffx.11994.1.S1_at--462--6492Chr08:7312310..7312333 (24 bp)
GATACCAGGAAAACGGCGGCATCGG
NONE
OsAffx.11994.1.S1_at--571--312Chr08:7312310..7312334 (25 bp)
ATACCAGGAAAACGGCGGCATCGGC
NONE
OsAffx.11994.1.S1_at--494--5831Chr02:6223125..6223149 (25 bp)
GACCTCGGCTCCGTTGGCGTCGGTG
LOC_Os02g12000
OsAffx.11994.1.S1_at--105--3791Chr02:6223122..6223146 (25 bp)
CTCGGCTCCGTTGGCGTCGGTGGCT
LOC_Os02g12000
OsAffx.11994.1.S1_at--432--1872Chr08:7312410..7312433 (24 bp)
ACGACCTCGAGTGCACGGTGGCGAT
NONE
OsAffx.11994.1.S1_at--1154--4072Chr08:7312410..7312434 (25 bp)
CGACCTCGAGTGCACGGTGGCGATG
NONE
OsAffx.11994.1.S1_at--882--1751Chr02:6223009..6223033 (25 bp)
ACCTCGAGTGCACGGTGGCGATGGT
LOC_Os02g12000
Target Sequence 
ATGGGATACCAGGAAAACGGCGGCATCGGCTGGAGACGACCTCGGCTCCGTTGGCGTCGGTGGCTGGGGACGACCTCGGC
TCCGTCGGCGGCAGCGGCGGTGGCGGATGGGGAGGACGTCGGCTCAGGCTGCAGCCGATGGGGAAGAGGGACGACCTCGA
GTGCACGGTGGCGATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis