Browse Element(s) Details


OsAffx.11998.1.S1_s_at

Description tigr:9630.m01093
TID=OsAffx.11998.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1208011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12030OsAffx.24926.1.S1_x_at11/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12030OsAffx.24926.3.S1_at1/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12040OsAffx.24926.3.S1_at11/112+6254346..6256373Leucine Rich Repeat family protein
LOC_Os02g12050OsAffx.11996.1.S1_at10/112+6259006..6260059hypothetical protein
LOC_Os02g12060OsAffx.2581.1.S1_at11/112+6261071..6261623proteinase inhibitor Rgpi9, putative
LOC_Os02g12070OsAffx.11997.1.S1_at11/112+6265995..6267117expressed protein
LOC_Os02g12080OsAffx.11998.1.S1_s_at11/112+6268374..6269146expressed protein
LOC_Os02g12090Os.47959.1.S1_at5/112+6270427..6271229hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_x_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.4.S1_at2/112+6274686..6279131hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11998.1.S1_s_at--837--971Chr02:6268425..6268449 (25 bp)
AGGAGCTTCTCGGATTCGCGTCGAG
LOC_Os02g12080
OsAffx.11998.1.S1_s_at--715--91Chr02:6268438..6268462 (25 bp)
ATTCGCGTCGAGTTGCAAGCAATCC
LOC_Os02g12080
OsAffx.11998.1.S1_s_at--881--3031Chr02:6268458..6268482 (25 bp)
AATCCTAGTGATGTTCCTCTTGCTT
LOC_Os02g12080
OsAffx.11998.1.S1_s_at--825--5411Chr02:6268572..6268596 (25 bp)
GAAGCCACCGGCAATAAGGTCTCCT
LOC_Os02g12080
OsAffx.11998.1.S1_s_at--873--351Chr02:6268585..6268609 (25 bp)
ATAAGGTCTCCTCGGTTTCTGTCTG
LOC_Os02g12080
OsAffx.11998.1.S1_s_at--267--8631Chr02:6268608..6268773 (25 bp)
TGGTGGAGTTCCTGCGAACCCTGGA
LOC_Os02g12080
OsAffx.11998.1.S1_s_at--1065--5071Chr02:6268779..6268803 (25 bp)
GCACGATCCTCCTGTTAGCAATGGA
LOC_Os02g12080
OsAffx.11998.1.S1_s_at--524--3692Chr02:6268939..6268963 (25 bp)
CTATCATTTTCTTTCGCATGCACGA
LOC_Os02g12080
OsAffx.11998.1.S1_s_at--549--9351Chr02:6268952..6268976 (25 bp)
TCGCATGCACGACTTAATCTGATTT
LOC_Os02g12080
OsAffx.11998.1.S1_s_at--914--1973Chr02:6269010..6269034 (25 bp)
ACTACCCTCCTTGTTGCTAGGAATT
LOC_Os02g12080
OsAffx.11998.1.S1_s_at--575--2851Chr02:6269053..6269077 (25 bp)
AAGTCTCTCTATCGGCCAAGGAAGT
LOC_Os02g12080
Target Sequence 
AGGAGCTTCTCGGATTCGCGTCGAGTTGCAAGCAATCCTAGTGATGTTCCTCTTGCTTCCGTTGCCGTTTCTGCCCAGGG
TGTTCGCCGCCGGCAGCTCAGGCGGCAACTCCGGCGAGCTAGTGGCCGGCGGCCGGGAGACTCGTAGGAAGCCACCGGCA
ATAAGGTCTCCTCGGTTTCTGTCTGGTGGAGTTCCTGCGAACCCTGGAGGTGGGCACGATCCTCCTGTTAGCAATGGAAG
GAGAGGCCGTTGATGAGAGAATCAGATCCAAAGTTCCAAACCCCATATTGTCGAAAACCAGAATACTTTTATCTTTTGAC
ACAACTGTAATAATACTTGAATATAGTGAAACTCTTCACTGAGGAGCATACTCCTATCATTTTCTTTCGCATGCACGACT
TAATCTGATTTGGAATTACGTTTTAGGAGGACCAGATGGGGGACACTACCCTCCTTGTTGCTAGGAATTTGAGCAGAGCT
AGGAACAAAGTCTCTCTATCGGCCAAGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11998.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis