Browse Element(s) Details


OsAffx.12016.1.S1_at

Description tigr:9630.m01229
TID=OsAffx.12016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to mutT domain protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1335011/11hydrolase, NUDIX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13310Os.56322.1.S1_at11/112+7097062..7100591Associated with HOX family protein, expressed
LOC_Os02g13320NANA2+7105533..7106147hypothetical protein
LOC_Os02g13330OsAffx.2595.1.S1_at11/112+7111106..7111729Bet v I allergen family protein, putative
LOC_Os02g13340Os.24143.1.A1_at10/112+7115786..7119630pentatricopeptide, putative, expressed
LOC_Os02g13350OsAffx.12016.1.S1_at11/112+7123770..7126123hydrolase, NUDIX family protein, expressed
LOC_Os02g13360OsAffx.12017.1.S1_at11/112+7126765..7131311expressed protein
LOC_Os02g13370Os.52377.1.S1_s_at11/112+7132009..7133382expressed protein
LOC_Os02g13370Os.52377.1.S1_at7/112+7132009..7133382expressed protein
LOC_Os02g13380Os.4170.1.S1_at8/112+7135189..7138046Early nodulin 93, putative, expressed
LOC_Os02g13390NANA2+7141810..7143857hypothetical protein
LOC_Os02g13400Os.7296.1.S1_at11/112+7144563..7150536Poly polymerase central domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
GO:0047631molecular_functionADP-ribose diphosphatase activity
GO:0051287molecular_functionNAD binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12016.1.S1_at--600--1991Chr02:7124427..7124451 (25 bp)
ACTCCAGTCCTCACTTTGTTATTGG
LOC_Os02g13350
OsAffx.12016.1.S1_at--1032--10431Chr02:7124897..7124921 (25 bp)
TTAGGCGGGCTTTGTTTATCATCAT
LOC_Os02g13350
OsAffx.12016.1.S1_at--919--5511Chr02:7125176..7125200 (25 bp)
GAAAATGTCCATCGCACTGTTCAGA
LOC_Os02g13350
OsAffx.12016.1.S1_at--262--2011Chr02:7125200..7125224 (25 bp)
ACATCTGGAAGATCCCTACGGGCTT
LOC_Os02g13350
OsAffx.12016.1.S1_at--997--7611Chr02:7125553..7125575 (23 bp)
GGGAACTCCACTTTTCAGATCGAAA
LOC_Os02g13350
OsAffx.12016.1.S1_at--1141--1231Chr02:7125575..7125599 (25 bp)
AGTTGTTTCCTGGATGTCGTTGCTT
LOC_Os02g13350
OsAffx.12016.1.S1_at--520--7211Chr02:7125590..7125717 (25 bp)
GTCGTTGCTTTCAGACATGCGCATC
LOC_Os02g13350
OsAffx.12016.1.S1_at--465--611Chr02:7125709..7125733 (25 bp)
ATGCGCATCAAGTCCTTTTCGATAA
LOC_Os02g13350
OsAffx.12016.1.S1_at--702--7211Chr02:7125932..7125956 (25 bp)
GTCGAAGAATTTGTCAGCCAGCCAT
LOC_Os02g13350
OsAffx.12016.1.S1_at--104--3571Chr02:7125985..7126009 (25 bp)
CATCACTGACATCTGCATTTCGGCA
LOC_Os02g13350
OsAffx.12016.1.S1_at--101--4111Chr02:7126060..7126084 (25 bp)
CGACAACAGGGTGGCTTATCTCTAC
LOC_Os02g13350
Target Sequence 
ACTCCAGTCCTCACTTTGTTATTGGAATAAGCAGATGGGCAACCTTAACTTTATTTGTTTTACAATTTTTTTAGGCGGGC
TTTGTTTATCATCATGCAGAGCCAGGGTGCTTGTTGTCAAAGAAGGAAAATGTCCATCGCACTGTTCAGACATCTGGAAG
ATCCCTACGGGCTTTATAGATAAGTTTGAAGATTTGTTTTCTGGAGCCATAAGAGAAGTTCGAGAAGAAACTGGGAACTC
CACTTTTCAGATCGAAAGTTGTTTCCTGGATGTCGTTGCTTTCAGACATGCGCATCAAGTCCTTTTCGATAAATCGGATA
TACTCTTCATATGCACACTCAAGCCACTCTCATCTGACATATCTATCGACGAGTCCGAGATTGAAGCAGCAAGGTGGATG
CCGGTCGAAGAATTTGTCAGCCAGCCATTCCATCAGGAGGATGAAATGTCCAGGGCCATCACTGACATCTGCATTTCGGC
ACATCACAAGTGCTACGCAGGACTCGCCGCGCATCAGGTGATGTCAATGCTCGACAACAGGGTGGCTTATCTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis