Browse Element(s) Details


OsAffx.12020.1.S1_at

Description tigr:9630.m01251
TID=OsAffx.12020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to kinesin-related protein; 103921-99132
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1357011/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13530Os.10120.3.S1_at11/112+7258550..726038040S ribosomal protein S24, putative, expressed
LOC_Os02g13540NANA2+7260978..7261178hypothetical protein
LOC_Os02g13550OsAffx.24227.1.S1_at10/112+7263069..7263566hypothetical protein
LOC_Os02g13560Os.50292.1.S1_at11/112+7273050..7278242Sugar transporter type 2a, putative, expressed
LOC_Os02g13570OsAffx.12020.1.S1_at11/112+7278455..7280993Kinesin motor domain containing protein, expressed
LOC_Os02g13570Os.25515.1.S1_s_at10/112+7278455..7280993Kinesin motor domain containing protein, expressed
LOC_Os02g13580OsAffx.24229.1.S1_at11/112+7281235..7285696Kinesin motor domain containing protein, expressed
LOC_Os02g13590OsAffx.12021.1.S1_at11/112+7299770..7300027hypothetical protein
LOC_Os02g13600OsAffx.12022.1.S1_s_at11/112+7300585..7301657expressed protein
LOC_Os02g13610NANA2+7303093..7303464retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12020.1.S1_at--330--6371Chr02:7279841..7279865 (25 bp)
GATCCTGAGATTTCTGGCCTTGCGG
LOC_Os02g13570
OsAffx.12020.1.S1_at--337--4271Chr02:7279838..7279862 (25 bp)
CCTGAGATTTCTGGCCTTGCGGATG
LOC_Os02g13570
OsAffx.12020.1.S1_at--1051--6251Chr02:7279817..7279841 (25 bp)
GATGTCGACTCGGATGGAAGGTTAA
LOC_Os02g13570
OsAffx.12020.1.S1_at--954--2871Chr02:7279800..7279824 (25 bp)
AAGGTTAAGCGATGCTTCGGATGGT
LOC_Os02g13570
OsAffx.12020.1.S1_at--656--631Chr02:7279789..7279813 (25 bp)
ATGCTTCGGATGGTATTTCCATGGG
LOC_Os02g13570
OsAffx.12020.1.S1_at--1158--7331Chr02:7279765..7279789 (25 bp)
GTGCAGAAGCTGATAGTTCAGTAAG
LOC_Os02g13570
OsAffx.12020.1.S1_at--799--6731Chr02:7279750..7279774 (25 bp)
GTTCAGTAAGCAATGTAGCAGATCA
LOC_Os02g13570
OsAffx.12020.1.S1_at--1098--5171Chr02:7279741..7279765 (25 bp)
GCAATGTAGCAGATCAAGAGCAAGA
LOC_Os02g13570
OsAffx.12020.1.S1_at--386--5951Chr02:7279724..7279748 (25 bp)
GAGCAAGAGAAAACATCCAACACTG
LOC_Os02g13570
OsAffx.12020.1.S1_at--741--3411Chr02:7278751..7278775 (25 bp)
CAGCAACAGGTGTACGAAAAAGTTC
LOC_Os02g13570
OsAffx.12020.1.S1_at--999--8731Chr02:7278741..7278765 (25 bp)
TGTACGAAAAAGTTCAACTTCCCAG
LOC_Os02g13570
Target Sequence 
GATCCTGAGATTTCTGGCCTTGCGGATGTCGACTCGGATGGAAGGTTAAGCGATGCTTCGGATGGTATTTCCATGGGTGC
AGAAGCTGATAGTTCAGTAAGCAATGTAGCAGATCAAGAGCAAGAGAAAACATCCAACACTGCTGCGAAAGAGCGGTTGA
CTAGGGCGGTGAACCGTGTCCAGAAGCTTACATTGCCGAAAGCTGGCCAGTCATCAAGCTTGCGACCTAAACCAAGAGAT
CCTGCCCCAGCTAGATCTTCAGCAGCAACAGGTGTACGAAAAAGTTCAACTTCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis