Browse Element(s) Details


OsAffx.12041.1.S1_at

Description tigr:9630.m01383
TID=OsAffx.12041.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1483011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14800Os.54344.1.S1_x_at11/112+8209594..8218225expressed protein
LOC_Os02g14800Os.49260.1.S1_at11/112+8209594..8218225expressed protein
LOC_Os02g14810OsAffx.24259.1.S1_at11/112+8227855..8230367expressed protein
LOC_Os02g14820OsAffx.24260.1.S1_at11/112+8233527..8234627hypothetical protein
LOC_Os02g14830OsAffx.12041.1.S1_at11/112+8240993..8242952hypothetical protein
LOC_Os02g14840Os.33370.1.S1_at10/112+8244346..8248443Potassium channel KAT1, putative, expressed
LOC_Os02g14850Os.55487.1.S1_at11/112+8256455..8257567expressed protein
LOC_Os02g14860OsAffx.12042.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed
LOC_Os02g14860Os.16117.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12041.1.S1_at--827--971Chr02:8241105..8241129 (25 bp)
AGGAGCTAGAGGCACGCATTCCCCA
LOC_Os02g14830
OsAffx.12041.1.S1_at--924--9511Chr02:8241145..8241169 (25 bp)
TCTCTCCAGGGACACGCGCAGCGGA
LOC_Os02g14830
OsAffx.12041.1.S1_at--12--7693Chr12:24975725..24975749 (24 bp)
GGGTACCCATTGTGGATGGCCTCAG
NONE
OsAffx.12041.1.S1_at--1040--7991Chr02:8241219..8241243 (25 bp)
GGATGGCCTCAGTATCAAGCGCGGA
LOC_Os02g14830
OsAffx.12041.1.S1_at--1124--9251Chr02:8241250..8241274 (25 bp)
TCCGGCCGACCTCGAAGGAGACGTA
LOC_Os02g14830
OsAffx.12041.1.S1_at--492--8371Chr02:8241275..8241299 (25 bp)
GGCGTCGATGCAGTGTACCAGATCT
LOC_Os02g14830
OsAffx.12041.1.S1_at--425--9971Chr02:8241290..8241314 (25 bp)
TACCAGATCTACTCGTTGGAGAGGC
LOC_Os02g14830
OsAffx.12041.1.S1_at--479--1471Chr02:8241315..8241338 (24 bp)
AGAAGGCGTCCCAGCGGCTCATGGC
LOC_Os02g14830
OsAffx.12041.1.S1_at--392--9631Chr02:8241396..8241416 (21 bp)
TCATGGCCGGCCTGTATGAGCTCCG
LOC_Os02g14830
OsAffx.12041.1.S1_at--631--10811Chr02:8241506..8241530 (25 bp)
TTGTCCACGCTGACACCGACGAAGC
LOC_Os02g14830
OsAffx.12041.1.S1_at--351--1311Chr02:8241597..8241621 (25 bp)
AGATGAGGCACCTGCGGTCGACCCA
LOC_Os02g14830
Target Sequence 
AGGAGCTAGAGGCACGCATTCCCCACGTGGGGGTCTCGCCTCTCTCCAGGGACACGCGCAGCGGACGGACGGCGAACGGC
GTGAGCGGGGAGACGACCCAGGGGTACCCATTGTGGATGGCCTCAGTATCAAGCGCGGAGCAGCCTCCGGCCGACCTCGA
AGGAGACGTAGGCGTCGATGCAGTGTACCAGATCTACTCGTTGGAGAGGCAGAAGGCGTCCCAGCGGCTCATGGCCGGCC
TGTATGAGCTCCGGGCAGCCCAGCCTCTGCGCCGCGAGGGTGCGAAGGTCGGCGGTGTTCCCCGCGGGGAGGCTGTGGTC
GTCGCTCAGCCGCTCGGCGTCCTTGTCCACGCTGACACCGACGAAGCAGTCCGCGGCGCCGGCGAGGAAGCGGCGGAGGG
AGCCCGGGATGTAGTCGGCGTGGAGGAACGGGAAGATGAGGCACCTGCGGTCGACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis