Browse Element(s) Details


OsAffx.12043.1.S1_at

Description tigr:9630.m01387
TID=OsAffx.12043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1487011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14840Os.33370.1.S1_at10/112+8244346..8248443Potassium channel KAT1, putative, expressed
LOC_Os02g14850Os.55487.1.S1_at11/112+8256455..8257567expressed protein
LOC_Os02g14860OsAffx.12042.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed
LOC_Os02g14860Os.16117.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed
LOC_Os02g14870OsAffx.12043.1.S1_at11/112+8268232..8270188hypothetical protein
LOC_Os02g14880OsAffx.24261.1.S1_at11/112+8289301..8289687hypothetical protein
LOC_Os02g14890Os.52914.1.S1_at11/112+8292476..8293240expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12043.1.S1_at--909--5871Chr02:8268802..8268826 (25 bp)
GAGCGTGACCGAGCTGCCGTTTGAC
LOC_Os02g14870
OsAffx.12043.1.S1_at--751--3951Chr02:8268749..8268773 (25 bp)
CGGACATCTACCTCGATTGCAATAA
LOC_Os02g14870
OsAffx.12043.1.S1_at--89--2971Chr02:8268726..8268750 (25 bp)
AATGGCATCGAAAATCCACCGGCTA
LOC_Os02g14870
OsAffx.12043.1.S1_at--1101--3011Chr02:8268677..8268701 (25 bp)
AATGCTCGCGTGAGATATCCAACTA
LOC_Os02g14870
OsAffx.12043.1.S1_at--324--711Chr02:8268651..8268675 (25 bp)
ATGATGTACCTGCTCTTGTTCCAAC
LOC_Os02g14870
OsAffx.12043.1.S1_at--713--10771Chr02:8268636..8268660 (25 bp)
TTGTTCCAACCGGACATGCTAATGC
LOC_Os02g14870
OsAffx.12043.1.S1_at--32--9131Chr02:8268589..8268613 (25 bp)
TGCTGTGGCCTGTCGCGAAATCAAG
LOC_Os02g14870
OsAffx.12043.1.S1_at--26--8051Chr02:8268525..8268549 (25 bp)
GGAGTTGCACGTTGGATTTCTGAAA
LOC_Os02g14870
OsAffx.12043.1.S1_at--119--2291Chr02:8268496..8268520 (25 bp)
AAATGCTGCACAACCTGGAGACCAT
LOC_Os02g14870
OsAffx.12043.1.S1_at--79--5071Chr02:8268468..8268492 (25 bp)
GCAGCTGCACGTAGGCTTGCCGAAG
LOC_Os02g14870
OsAffx.12043.1.S1_at--147--9411Chr02:8268302..8268326 (25 bp)
TCGTCTGGCTCCTACTACATAGAAT
LOC_Os02g14870
Target Sequence 
GAGCGTGACCGAGCTGCCGTTTGACGAGGCCGTCCTTGTCTGGCACATCGCCACGGACATCTACCTCGATTGCAATAATG
GCATCGAAAATCCACCGGCTACCGCCGATGAGCGCGCCGCCGTGAAATGCTCGCGTGAGATATCCAACTACATGATGTAC
CTGCTCTTGTTCCAACCGGACATGCTAATGCCCGGCACCCGACAGAGCCTGTTTGCTGTGGCCTGTCGCGAAATCAAGCA
CGCGTTGAGGGACCAGAGGCAGCGGCTCGATGAGAGGGGAGTTGCACGTTGGATTTCTGAAAACCCAAATGCTGCACAAC
CTGGAGACCATCTCGCAGCTGCACGTAGGCTTGCCGAAGCGATGATGCAGATGAACGATGCAGGAAGGATGTTGAAGGTT
ATCAGTGGGGTGTGGGTGGAGATGATATGCTACTCCGCGAGCAGATGCAGGGGATTCCTGCACGCCAAGAGCTTGGGTGC
CGGCGGGGAGTTCCTCACTGTCGTCTGGCTCCTACTACATAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis