Browse Element(s) Details


OsAffx.12044.1.S1_at

Description tigr:9630.m01397
TID=OsAffx.12044.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1497011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14910OsAffx.2611.1.S1_at11/112+8323890..8325786bZIP transcription factor family protein, expressed
LOC_Os02g14929Os.54112.1.S1_at11/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14929OsAffx.27518.3.S1_x_at4/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14929OsAffx.22180.1.S1_at1/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14948NANA2+8348912..8349208NA
LOC_Os02g14970OsAffx.12044.1.S1_at11/112+8350305..8352194expressed protein
LOC_Os02g14980OsAffx.2612.1.S1_at11/112+8358863..8362413Sodium/calcium exchanger protein, expressed
LOC_Os02g14980OsAffx.15454.1.S1_x_at1/112+8358863..8362413Sodium/calcium exchanger protein, expressed
LOC_Os02g14990NANA2+8363274..8363903Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15000NANA2+8367352..8367987Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15010OsAffx.12046.1.S1_at11/112+8375342..8375983Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12044.1.S1_at--1141--6351Chr02:8351827..8351851 (25 bp)
GATCCAATATCGTCGACAGAAAAAT
LOC_Os02g14970
OsAffx.12044.1.S1_at--372--2711Chr02:8351866..8351890 (25 bp)
AAGCTTCTTGAACCAGAGCTCTCCA
LOC_Os02g14970
OsAffx.12044.1.S1_at--151--10751Chr02:8351873..8351897 (25 bp)
TTGAACCAGAGCTCTCCATCGCAGC
LOC_Os02g14970
OsAffx.12044.1.S1_at--207--3551Chr02:8351889..8351913 (25 bp)
CATCGCAGCCACAAACCGCAAGAGG
LOC_Os02g14970
OsAffx.12044.1.S1_at--283--6591Chr02:8351938..8351962 (25 bp)
GATTGCAATTGCTCTATTCATCCCC
LOC_Os02g14970
OsAffx.12044.1.S1_at--253--10631Chr02:8351964..8351988 (25 bp)
TTCGTCTCTTTCTTTCATCCTCTCA
LOC_Os02g14970
OsAffx.12044.1.S1_at--410--571Chr02:8351980..8352004 (25 bp)
ATCCTCTCATCTTGGCCCAAAAAAG
LOC_Os02g14970
OsAffx.12044.1.S1_at--415--7991Chr02:8352065..8352089 (25 bp)
GGATGACAGCGACTGTGCCATTGTC
LOC_Os02g14970
OsAffx.12044.1.S1_at--760--5731Chr02:8352075..8352099 (25 bp)
GACTGTGCCATTGTCGCGGAGCGAC
LOC_Os02g14970
OsAffx.12044.1.S1_at--322--9031Chr02:8352126..8352150 (25 bp)
TGCACGGTGCGGTGTGAGAAATCTC
LOC_Os02g14970
OsAffx.12044.1.S1_at--125--8691Chr02:8352138..8352162 (25 bp)
TGTGAGAAATCTCGTGAATCACGAC
LOC_Os02g14970
Target Sequence 
GATCCAATATCGTCGACAGAAAAATGCAACAACGGGGTAAAGCTTCTTGAACCAGAGCTCTCCATCGCAGCCACAAACCG
CAAGAGGCACGGGAAAAGGGAGAGGGTAGAAGATTGCAATTGCTCTATTCATCCCCCTTCGTCTCTTTCTTTCATCCTCT
CATCTTGGCCCAAAAAAGCTCCAGGAAGAGCATGTGAGGATGACAGCGACTGTGCCATTGTCGCGGAGCGACGGAAGGAG
GCGAAGAGGGATCATGGGTGCACGGTGCGGTGTGAGAAATCTCGTGAATCACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis