Browse Element(s) Details


OsAffx.12056.1.S1_at

Description tigr:9630.m01452
TID=OsAffx.12056.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=6859-4829
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1551010/11BED zinc finger family protein
LOC_Os02g153802/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15480NANA2+8669169..8671062transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15490Os.47463.1.S1_x_at6/112+8671153..8674094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15490Os.14491.2.S1_x_at5/112+8671153..8674094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15500OsAffx.12055.2.S1_at11/112+8679388..8680777expressed protein
LOC_Os02g15510OsAffx.12056.1.S1_at10/112+8694018..8697791BED zinc finger family protein
LOC_Os02g15520OsAffx.12057.1.S1_at11/112+8700658..8702514hAT family dimerisation domain containing protein, expressed
LOC_Os02g15530OsAffx.2624.1.S1_at11/112+8706393..8707266hypothetical protein
LOC_Os02g15540Os.49283.1.S1_at11/112+8714118..8715036expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009652biological_processthigmotropism
GO:0019722biological_processcalcium-mediated signaling
GO:0030163biological_processprotein catabolism
GO:0004871molecular_functionsignal transducer activity
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12056.1.S1_at--322--8131Chr02:8696419..8696443 (25 bp)
GGACTATGATATGCAATCCCATCTT
LOC_Os02g15510
OsAffx.12056.1.S1_at--168--1551Chr02:8696340..8696364 (25 bp)
AGCATATCGCTTATTCTAGACCCAA
LOC_Os02g15510
OsAffx.12056.1.S1_at--569--10532Chr02:8696327..8696351 (25 bp)
TTCTAGACCCAAGATTCAAGCTCGT
LOC_Os02g15510
OsAffx.12056.1.S1_at--905--6551Chr02:8696315..8696339 (25 bp)
GATTCAAGCTCGTCAACGCTGAACG
LOC_Os02g15510
OsAffx.12056.1.S1_at--78--7031Chr02:8696304..8696328 (25 bp)
GTCAACGCTGAACGCCTTCTAAAGA
LOC_Os02g15510
OsAffx.12056.1.S1_at--806--9832Chr02:8696285..8696309 (25 bp)
TAAAGAAAGCTTCCCTACCTCCAGA
LOC_Os02g15510
OsAffx.12056.1.S1_at--551--8271Chr02:8696202..8696226 (25 bp)
GGCAGTGCAAGGCAGCACACCAATC
LOC_Os02g15510
OsAffx.12056.1.S1_at--830--8131Chr02:8696158..8696182 (25 bp)
GGACATCGATCCATTCCAGCAAATT
LOC_Os02g15510
OsAffx.12056.1.S1_at--597--8691NONE
TGTCACAGTCCAAGTTCAATCACCA
NONE
OsAffx.12056.1.S1_at--268--351Chr02:8694116..8694140 (25 bp)
ATAATGCAAACTCTGGGCCTGAACC
LOC_Os02g15510
OsAffx.12056.1.S1_at--750--5435Chr04:12887891..12887915 (25 bp)
GAACCCGATGAAGGCGGAGCTACAA
NONE
Target Sequence 
GGACTATGATATGCAATCCCATCTTGAACAAACAAAAGAATATATGGACAAGTTTTTTGAGGATTCATATTTATCACAAA
GCATATCGCTTATTCTAGACCCAAGATTCAAGCTCGTCAACGCTGAACGCCTTCTAAAGAAAGCTTCCCTACCTCCAGAT
CGCATTTCGGAGGTTCAAGCAGCAGTCGTTCAGCTCTTTCAGGACTACAGTAATCAGGGCAGTGCAAGGCAGCACACCAA
TCATAACAATGAAAATGTAATGGACATCGATCCATTCCAGCAAATTGATAACAGTACTTTCCAAACTGTTGGTCAATCCA
GTATGGAGCATGATCACAGGAGAACAGAACTTGATGCTTACCTGCGAGAAAAGACCGTTCCAATCAAGCAAGAGAATTTC
GACATTCTCAAATGGTGGAAGGAGAACTGTCACAGTCCAAGTTCAATCACCACCAAGAAGCTTAGAACCATAATGCAAAC
TCTGGGCCTGAACCCGATGAAGGCGGAGCTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis