Browse Element(s) Details


OsAffx.12067.1.S1_at

Description tigr:9630.m01513
TID=OsAffx.12067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=truncated Xa1-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1611011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16060OsAffx.12065.1.S1_at11/112+9136746..9140118NBS-LRR disease resistance protein, putative, expressed
LOC_Os02g16070OsAffx.12066.1.S1_at10/112+9142456..9144354Leucine Rich Repeat family protein
LOC_Os02g16080Os.52564.1.S1_at8/112+9148257..9153741retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16080Os.14444.1.S1_at1/112+9148257..9153741retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16090NANA2+9155584..9158764retrotransposon protein, putative, LINE subclass
LOC_Os02g16100NANA2+9160561..9161199Xa1, putative
LOC_Os02g16110OsAffx.12067.1.S1_at11/112+9163263..9166120Leucine Rich Repeat family protein
LOC_Os02g16120Os.47463.1.S1_x_at6/112+9170576..9174273transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g16120Os.14491.2.S1_x_at5/112+9170576..9174273transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g16130NANA2+9179882..9180694transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g16140OsAffx.29742.5.S1_s_at11/112+9183675..9185705transposon protein, putative, unclassified
LOC_Os02g16140OsAffx.29742.4.S1_x_at1/112+9183675..9185705transposon protein, putative, unclassified
LOC_Os02g16140Os.46314.2.S1_x_at1/112+9183675..9185705transposon protein, putative, unclassified
LOC_Os02g16140OsAffx.32036.1.S1_at1/112+9183675..9185705transposon protein, putative, unclassified
LOC_Os02g16150NANA2+9187695..9188768retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12067.1.S1_at--52--9531Chr02:9165530..9165554 (25 bp)
TCTCTCACACATCTTACACTATTGG
LOC_Os02g16110
OsAffx.12067.1.S1_at--608--8571Chr02:9165577..9165601 (25 bp)
TGGATTTGATCCTCTCATTACACTC
LOC_Os02g16110
OsAffx.12067.1.S1_at--946--10552Chr02:9165649..9165673 (25 bp)
TTCTTGTTCCATAGCAGCAGATTTG
LOC_Os02g16110
OsAffx.12067.1.S1_at--398--10411Chr02:9165701..9165725 (25 bp)
TTATCTGCAGGTTCCTTACAACTGG
LOC_Os02g16110
OsAffx.12067.1.S1_at--561--251Chr02:9165744..9165768 (25 bp)
ATATCTCAGGAGTGCTTGTTCCCTC
LOC_Os02g16110
OsAffx.12067.1.S1_at--483--5511Chr02:9165845..9165869 (25 bp)
GAACAAGAGCATGCGCTTCAGCTCC
LOC_Os02g16110
OsAffx.12067.1.S1_at--324--3271Chr02:9165884..9165908 (25 bp)
CAACTATATTTTGCCGACTGCCCAA
LOC_Os02g16110
OsAffx.12067.1.S1_at--31--4211Chr02:9165923..9165947 (25 bp)
CCCGATGGGTTGCATCACATTTCTT
LOC_Os02g16110
OsAffx.12067.1.S1_at--1024--11Chr02:9165983..9166007 (25 bp)
ATTGGATTCCTACCCAAGGAGGGCT
LOC_Os02g16110
OsAffx.12067.1.S1_at--405--7591Chr02:9166003..9166027 (25 bp)
GGGCTTCCCCTCTTCATTGAGAGAT
LOC_Os02g16110
OsAffx.12067.1.S1_at--17--6791Chr02:9166033..9166057 (25 bp)
GTTATCAGAGTGTAGCGTCGATCTA
LOC_Os02g16110
Target Sequence 
TCTCTCACACATCTTACACTATTGGAATGTGAAGACTTAACAGTAGATGGATTTGATCCTCTCATTACACTCAACCTCAA
GGAATTGGTGGTTTTAAATAATTGTTATGAGAACAATTATTCTTGTTCCATAGCAGCAGATTTGCTCTCAGAAATGACAA
GGACCAAAGTATTATCTGCAGGTTCCTTACAACTGGAAGCACTTAAGGTGGACAATATCTCAGGAGTGCTTGTTCCCTCC
ATTTGCAGCCTCCTTGCCGCCAACCTCCACAAGTTAATTTTCAAATCTGACTTGCAGATGGAAAGCTTCGATGAAGAACA
AGAGCATGCGCTTCAGCTCCTCACCTCCCTCAAGCAACTATATTTTGCCGACTGCCCAAGTCTGCTTTCCCTCCCCGATG
GGTTGCATCACATTTCTTCTCTCCAGAAATTGCACATATATAATTGTCCTAAAATTGGATTCCTACCCAAGGAGGGCTTC
CCCTCTTCATTGAGAGATCTAGTGTTATCAGAGTGTAGCGTCGATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis