Browse Element(s) Details


OsAffx.12066.1.S1_at

Description tigr:9630.m01509
TID=OsAffx.12066.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1607010/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16040Os.7899.1.S1_at11/112+9116018..9119492Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os02g16050Os.14919.1.S1_at5/112+9123054..9130846transposon protein, putative, Mutator sub-class
LOC_Os02g16050Os.56216.1.S1_at2/112+9123054..9130846transposon protein, putative, Mutator sub-class
LOC_Os02g16050OsAffx.29313.1.S1_at1/112+9123054..9130846transposon protein, putative, Mutator sub-class
LOC_Os02g16060OsAffx.12065.1.S1_at11/112+9136746..9140118NBS-LRR disease resistance protein, putative, expressed
LOC_Os02g16070OsAffx.12066.1.S1_at10/112+9142456..9144354Leucine Rich Repeat family protein
LOC_Os02g16080Os.52564.1.S1_at8/112+9148257..9153741retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16080Os.14444.1.S1_at1/112+9148257..9153741retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16090NANA2+9155584..9158764retrotransposon protein, putative, LINE subclass
LOC_Os02g16100NANA2+9160561..9161199Xa1, putative
LOC_Os02g16110OsAffx.12067.1.S1_at11/112+9163263..9166120Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12066.1.S1_at--544--10011Chr02:9143105..9143129 (25 bp)
TAGCAGCGGATTTGTTCTCAGTGGT
LOC_Os02g16070
OsAffx.12066.1.S1_at--822--1511Chr02:9143165..9143189 (25 bp)
AGCAGCTGGAACAACTCTCGGTGGA
LOC_Os02g16070
OsAffx.12066.1.S1_at--257--8491Chr02:9143231..9143255 (25 bp)
TGGCTAGCACCCTCTGTAAGATGGA
LOC_Os02g16070
OsAffx.12066.1.S1_at--116--8511Chr02:9143276..9143300 (25 bp)
TGGAAAGCTTCACCGAAACGCAGGA
LOC_Os02g16070
OsAffx.12066.1.S1_at--458--10071Chr02:9143336..9143360 (25 bp)
TAGGATTCTATGTGTGTCCCCGTCT
LOC_Os02g16070
OsAffx.12066.1.S1_at--272--1451Chr02:9143373..9143397 (25 bp)
AGAAGGGTTACATCGCCTTTCTTCA
LOC_Os02g16070
OsAffx.12066.1.S1_at--686--5591Chr02:9143428..9143452 (25 bp)
GAAATCAGAGCGCTTCCCAAGGAAG
LOC_Os02g16070
OsAffx.12066.1.S1_at--148--6711Chr02:9143454..9143478 (25 bp)
GTTCCCCGCATCACTGAGATATGTA
LOC_Os02g16070
OsAffx.12066.1.S1_at--244--2711Chr02:9143531..9143554 (24 bp)
AAGCATCAACGCCAGGTTTACGTGA
LOC_Os02g16070
OsAffx.12066.1.S1_at--831--7871NONE
GGTTTACGTGATCGCTGCTCAAGGA
NONE
OsAffx.12066.1.S1_at--1035--2911Chr02:9144267..9144291 (25 bp)
AAGGAGCATTCCTCTCTTCATTGAG
LOC_Os02g16070
Target Sequence 
TAGCAGCGGATTTGTTCTCAGTGGTGGCAATGATGGAAGTAATACCTGCAGGTTCCTTCCAGCAGCTGGAACAACTCTCG
GTGGACAGCATCTCAGCAGTGCTTGTTGCCCCCATTTGCAACCTCCTGGCTAGCACCCTCTGTAAGATGGAATTCCCGTA
TGACATGTGGATGGAAAGCTTCACCGAAACGCAGGAGGAGGCGCTTCAGCTCCTCACCTCCCTCCAATGCCTAGGATTCT
ATGTGTGTCCCCGTCTGCAGTCCCTCCCAGAAGGGTTACATCGCCTTTCTTCACTTCGTGAACTAATTATCCATAAATGT
CCTGAAATCAGAGCGCTTCCCAAGGAAGGGTTCCCCGCATCACTGAGATATGTATTTGCATACGAGGGCATCAGTGTTGA
TCTAAAGGATCAACTCAAGAAACTAAAAGCATCAACGCCAGGTTTACGTGATCGCTGCTCAAGGAGCATTCCTCTCTTCA
TTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12066.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis