Browse Element(s) Details


OsAffx.12125.3.S1_at

Description tigr:9640.m00531
TID=OsAffx.12125.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0611011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06080OsAffx.19515.1.S1_s_at11/1112+2834309..2836130expressed protein
LOC_Os12g06080Os.5875.1.S1_at11/1112+2834309..2836130expressed protein
LOC_Os12g06090NANA12+2844232..2844941hypothetical protein
LOC_Os12g06100Os.21415.1.S1_at11/1112+2850829..2855264TLD family protein, expressed
LOC_Os12g06110OsAffx.12125.3.S1_x_at11/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06110OsAffx.12125.3.S1_at11/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06110OsAffx.12125.1.S1_x_at4/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06120OsAffx.31608.1.S1_at10/1112+2858531..2859785expressed protein
LOC_Os12g06120Os.56500.1.S1_at1/1112+2858531..2859785expressed protein
LOC_Os12g06130NANA12+2867423..2868868hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0016049biological_processcell growth
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12125.3.S1_at--941--2451Chr12:2856602..2857018 (25 bp)
AACAACGTGTTCCGCAGGCGTCGGA
LOC_Os12g06110
OsAffx.12125.3.S1_at--865--1391Chr12:2856544..2856568 (25 bp)
AGACGATGAGAGGAGCGCCTGCCCC
LOC_Os12g06110
OsAffx.12125.3.S1_at--843--5771Chr12:2856543..2856567 (25 bp)
GACGATGAGAGGAGCGCCTGCCCCA
LOC_Os12g06110
OsAffx.12125.3.S1_at--56--1891Chr12:2856542..2856566 (25 bp)
ACGATGAGAGGAGCGCCTGCCCCAG
LOC_Os12g06110
OsAffx.12125.3.S1_at--1124--6011Chr12:2856537..2856561 (25 bp)
GAGAGGAGCGCCTGCCCCAGGGAGG
LOC_Os12g06110
OsAffx.12125.3.S1_at--780--7571Chr12:2856494..2856518 (25 bp)
GGGCGTCCATCTTGTCAGAGCCGTA
LOC_Os12g06110
OsAffx.12125.3.S1_at--286--4651Chr12:2856492..2856516 (25 bp)
GCGTCCATCTTGTCAGAGCCGTACG
LOC_Os12g06110
OsAffx.12125.3.S1_at--410--7271Chr12:2856490..2856514 (25 bp)
GTCCATCTTGTCAGAGCCGTACGCC
LOC_Os12g06110
OsAffx.12125.3.S1_at--526--4331Chr12:2856488..2856512 (25 bp)
CCATCTTGTCAGAGCCGTACGCCGA
LOC_Os12g06110
OsAffx.12125.3.S1_at--580--9231Chr12:2856359..2856383 (25 bp)
TCCATCGTGGTTCCATCCGCCATTG
LOC_Os12g06110
OsAffx.12125.3.S1_at--276--3551Chr12:2856357..2856381 (25 bp)
CATCGTGGTTCCATCCGCCATTGGC
LOC_Os12g06110
Target Sequence 
AACAACGTGTTCCGCAGGCGTCGGACGCTGCCGCGGAGAGCATCCGCGCGGGCGCGGGAGACGATGAGAGGAGCGCCTGC
CCCAGGGAGGGGAAGCTCCGCAGGAGCGGGGCGTCCATCTTGTCAGAGCCGTACGCCGACCGATGACGGCGGCGCCTGGG
AGTTCTTGGACAACCTGACCAACTGCAACGCCTTGGCTGAGATATTCCTCGACGGCAACATGTTCGCCGGCGTGATGTTG
AGCTCCATCGTGGTTCCATCCGCCATTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12125.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis