Browse Element(s) Details


OsAffx.12126.1.S1_at

Description tigr:9630.m01918
TID=OsAffx.12126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2006011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20020OsAffx.22947.1.S1_x_at7/112+11790432..11795016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20020OsAffx.22947.2.S1_x_at4/112+11790432..11795016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20020OsAffx.22947.3.S1_x_at2/112+11790432..11795016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20020OsAffx.22947.5.S1_x_at2/112+11790432..11795016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20030NANA2+11795827..11796300retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20040Os.50973.1.S1_at11/112+11798880..11799843transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g20050NANA2+11801936..11805226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g20060OsAffx.12126.1.S1_at11/112+11814272..11814752hypothetical protein
LOC_Os02g20070Os.46995.1.S1_at1/112+11817440..11819648retrotransposon protein, putative, unclassified
LOC_Os02g20070Os.46995.1.S1_x_at1/112+11817440..11819648retrotransposon protein, putative, unclassified
LOC_Os02g20080NANA2+11824825..11827638retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20090NANA2+11832009..11834182retrotransposon protein, putative, unclassified
LOC_Os02g20100OsAffx.1646.1.S1_x_at1/112+11834516..11840838retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12126.1.S1_at--44--5431Chr02:11814320..11814344 (25 bp)
GAAGCCGGAGAGAGACGCCGCGCCG
LOC_Os02g20060
OsAffx.12126.1.S1_at--849--4391Chr02:11814344..11814368 (25 bp)
GCCAAGAATAATAAGCGCCGCCGCA
LOC_Os02g20060
OsAffx.12126.1.S1_at--555--4211Chr02:11814364..11814388 (25 bp)
CCGCACCGAGAAAGCGGAGGACGCC
LOC_Os02g20060
OsAffx.12126.1.S1_at--1073--1871Chr02:11814408..11814432 (25 bp)
ACGAGGATCAGGTGGTCACCTCCAA
LOC_Os02g20060
OsAffx.12126.1.S1_at--608--3451Chr02:11814416..11814440 (25 bp)
CAGGTGGTCACCTCCAAGGCGATGG
LOC_Os02g20060
OsAffx.12126.1.S1_at--481--8591Chr02:11814420..11814444 (25 bp)
TGGTCACCTCCAAGGCGATGGAGGC
LOC_Os02g20060
OsAffx.12126.1.S1_at--98--6251Chr02:11814436..11814460 (25 bp)
GATGGAGGCGGTGTCAGTGCCGGAG
LOC_Os02g20060
OsAffx.12126.1.S1_at--415--6151Chr02:11814461..11814485 (25 bp)
GAGGTACTCCGGGCCAAGAAGAAGA
LOC_Os02g20060
OsAffx.12126.1.S1_at--159--2351Chr02:11814539..11814563 (25 bp)
AAAGCCGCCGACAAGAAAAGGAGAG
LOC_Os02g20060
OsAffx.12126.1.S1_at--497--1591Chr02:11814576..11814600 (25 bp)
AGCTCCGCACCGAGGAAGCAGAGGC
LOC_Os02g20060
OsAffx.12126.1.S1_at--1130--2711Chr02:11814591..11814615 (25 bp)
AAGCAGAGGCCGGTCGTGATGACGA
LOC_Os02g20060
Target Sequence 
GAAGCCGGAGAGAGACGCCGCGCCGCCAAGAATAATAAGCGCCGCCGCACCGAGAAAGCGGAGGACGCCGACGGCGGCTG
CGGCGGTGACGAGGATCAGGTGGTCACCTCCAAGGCGATGGAGGCGGTGTCAGTGCCGGAGGAGGTACTCCGGGCCAAGA
AGAAGAACGGCGACCGGCGAGGTCGCAGCAAGGAAGCCGAAGAGAGGCGCCGCGCCAAGAAAGCCGCCGACAAGAAAAGG
AGAGCAGCCGCCAAGAAGCTCCGCACCGAGGAAGCAGAGGCCGGTCGTGATGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis