Browse Element(s) Details


OsAffx.12149.1.S1_at

Description tigr:9630.m02065
TID=OsAffx.12149.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2154011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21510Os.54297.1.S1_at11/112+12758247..12762201NOL1/NOP2/sun family protein, putative, expressed
LOC_Os02g21520Os.17608.1.S1_s_at11/112+12765278..12772006chalcone isomerase 3, putative, expressed
LOC_Os02g21520OsAffx.24370.1.S1_at10/112+12765278..12772006chalcone isomerase 3, putative, expressed
LOC_Os02g21530OsAffx.24371.1.S1_at11/112+12777845..12778813expressed protein
LOC_Os02g21540OsAffx.12149.1.S1_at11/112+12780483..12782727hypothetical protein
LOC_Os02g21550Os.57408.1.S1_at11/112+12788664..12790742oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g21560NANA2+12798340..12804725retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12149.1.S1_at--712--9791Chr02:12781531..12781555 (25 bp)
TAAGACAGTGCAGTTAGAGAGCCTA
LOC_Os02g21540
OsAffx.12149.1.S1_at--806--6151Chr02:12781579..12781603 (25 bp)
GAGGTACAAGCCAACTATGCAAGCA
LOC_Os02g21540
OsAffx.12149.1.S1_at--375--651Chr02:12781620..12781644 (25 bp)
ATGAAACCCCATATGGTGGCGGTGA
LOC_Os02g21540
OsAffx.12149.1.S1_at--815--7691Chr02:12781731..12781755 (25 bp)
GGGTACATACATTTGAGCATGCCAT
LOC_Os02g21540
OsAffx.12149.1.S1_at--305--5191Chr02:12781787..12781811 (25 bp)
GCAATCACCAAATATGCTCTAGTTG
LOC_Os02g21540
OsAffx.12149.1.S1_at--179--1351Chr02:12782370..12782394 (25 bp)
AGAGTTGCTTTGTGCTATAGGGAGA
LOC_Os02g21540
OsAffx.12149.1.S1_at--232--3511Chr02:12782423..12782447 (25 bp)
CATGGGTTGTTGCAGCCAAAGATAA
LOC_Os02g21540
OsAffx.12149.1.S1_at--393--10031Chr02:12782471..12782495 (25 bp)
TAGACTTGTTATGTGGTGACCTGCA
LOC_Os02g21540
OsAffx.12149.1.S1_at--1151--7371Chr02:12782486..12782510 (25 bp)
GTGACCTGCAAGTTGGTACTGGACA
LOC_Os02g21540
OsAffx.12149.1.S1_at--480--7831Chr02:12782500..12782635 (25 bp)
GGTACTGGACAAGGGAATTCTCAAT
LOC_Os02g21540
OsAffx.12149.1.S1_at--688--5671Chr02:12782655..12782679 (25 bp)
GACATTTCCTAGACAAGTAGTTCCA
LOC_Os02g21540
Target Sequence 
TAAGACAGTGCAGTTAGAGAGCCTAGATGATGTGTTATTTGAGGAACAGAGGTACAAGCCAACTATGCAAGCAAGTGAAG
ATGATGGGAATGAAACCCCATATGGTGGCGGTGAAGATGAGCAGTCTGTTGAAGAACTTGGCAGTGATGGGGAGGTAAGG
ATAAGGCAGGACAAGCAACCAAGATACAAGAAGAAGGATGGGGTACATACATTTGAGCATGCCATGAAGTTCAATTGCAA
GAAGCAGTTCAAGAAAGCAATCACCAAATATGCTCTAGTTGAGAAGAATGCCATAGATTTTGTAAAAGATGATCAGAAAA
GGGTGCTACCAATTAATGGAGAGTTGCTTTGTGCTATAGGGAGAGATGGAAACAATCAAATGTACCCAATTGCATGGGTT
GTTGCAGCCAAAGATAACAATGAAGAGTGGGATTGGTTTATAGACTTGTTATGTGGTGACCTGCAAGTTGGTACTGGACA
AGGGAATTCTCAATATCTATGCAAATTGGAAGAGACATTTCCTAGACAAGTAGTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis