Browse Element(s) Details


OsAffx.12202.1.S1_at

Description tigr:9630.m02487
TID=OsAffx.12202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to extracellular ribonuclease precursor (ec 3.1.-.-).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2640011/11nuclease, EndA/NucM family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26370Os.10077.1.S1_at11/112+15476870..15480056expressed protein
LOC_Os02g26370Os.10077.2.S1_at10/112+15476870..15480056expressed protein
LOC_Os02g26380OsAffx.24432.1.S1_at11/112+15486938..15487410hypothetical protein
LOC_Os02g26390Os.9623.1.A1_at11/112+15490019..15492569expressed protein
LOC_Os02g26400OsAffx.12202.1.S1_at11/112+15496752..15501303nuclease, EndA/NucM family protein, expressed
LOC_Os02g26410Os.46012.2.S1_x_at6/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26410Os.46012.3.S1_x_at3/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26410Os.27088.1.A1_x_at3/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26420NANA2+15510255..15513417retrotransposon protein, putative, unclassified
LOC_Os02g26430Os.56922.1.S1_at11/112+15515627..15516852WRKY DNA binding domain containing protein, expressed
LOC_Os02g26440Os.39418.1.S1_s_at10/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26440OsAffx.12203.1.S1_at10/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26440Os.39418.1.S1_at4/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26450OsAffx.12204.1.S1_at11/112+15523769..15526038transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12202.1.S1_at--671--2611Chr02:15497796..15497820 (25 bp)
AACCCTTTCGTTGACCATCCAGAAT
LOC_Os02g26400
OsAffx.12202.1.S1_at--1033--1191Chr02:15497176..15497200 (25 bp)
AGTTTGTTGAGTTAGCGGTACGCAC
LOC_Os02g26400
OsAffx.12202.1.S1_at--1--4691Chr02:15497162..15497186 (25 bp)
GCGGTACGCACGTCATTAGATGCAA
LOC_Os02g26400
OsAffx.12202.1.S1_at--1097--5131Chr02:15497141..15497165 (25 bp)
GCAAAAGATCTTACGCTCATACTGT
LOC_Os02g26400
OsAffx.12202.1.S1_at--322--2231Chr02:15497071..15497095 (25 bp)
ACAAGGATGGCTTCAGTGTTGCTGA
LOC_Os02g26400
OsAffx.12202.1.S1_at--957--3391Chr02:15497014..15497038 (25 bp)
CAGCATTCATCACTCTCCAAAATGG
LOC_Os02g26400
OsAffx.12202.1.S1_at--607--9211Chr02:15496999..15497023 (25 bp)
TCCAAAATGGACCTGCTGATGGCAT
LOC_Os02g26400
OsAffx.12202.1.S1_at--497--4751Chr02:15496985..15497009 (25 bp)
GCTGATGGCATAGCTCTTGTCTATA
LOC_Os02g26400
OsAffx.12202.1.S1_at--675--2731Chr02:15496945..15496969 (25 bp)
AAGAAGTCTTGGATTTTCTCTCCTA
LOC_Os02g26400
OsAffx.12202.1.S1_at--686--4391Chr02:15496889..15496913 (25 bp)
GCCAAGGGCATGGTCTCTGTAGACA
LOC_Os02g26400
OsAffx.12202.1.S1_at--644--10451Chr02:15496816..15496840 (25 bp)
TTACCGGGAACAAGATTGGCGACTT
LOC_Os02g26400
Target Sequence 
AACCCTTTCGTTGACCATCCAGAATATGCAAATCTTATATGGGGGAATTCCCTTGGTGAGAGTTCAAGTTCGGTCAGAAC
ATTTCCAGAGGCTTGGGTAAATGAGTTCCACTATGAAAACAAAGGCAAAGATGAGAATGAGTTTGTTGAGTTAGCGGTAC
GCACGTCATTAGATGCAAAAGATCTTACGCTCATACTGTATAATGGAGCAAACGGGCGAATGTACAATTCTCTGAATCTA
GATGACAAGGATGGCTTCAGTGTTGCTGAAAGCAGTTCTAGTTCTAGTTATTTGATCTACACAGCATTCATCACTCTCCA
AAATGGACCTGCTGATGGCATAGCTCTTGTCTATAAAAATGGAAACAGAAAAGAAGTCTTGGATTTTCTCTCCTATGAAG
GTAGTATGAGAGCACTGGATGGACCAGCCAAGGGCATGGTCTCTGTAGACATGATGCTCAAGGAGACAGACGAGTCATCT
CAACAAGATTCGTTGGGACTTACCGGGAACAAGATTGGCGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis