Browse Element(s) Details


OsAffx.12229.1.S1_at

Description tigr:9633.m02065
TID=OsAffx.12229.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2334011/11expressed protein
LOC_Os04g412202/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23290Os.9332.2.S1_x_at2/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23290OsAffx.22722.1.S1_x_at1/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23290Os.9332.2.S1_at1/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23300NANA5+13222759..13224075retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23310NANA5+13228106..13228342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23320Os.27127.1.S1_a_at11/115+13230517..13234739expressed protein
LOC_Os05g23330NANA5+13237403..13238344transposon protein, putative, Pong sub-class
LOC_Os05g23340OsAffx.12229.1.S1_at11/115+13242739..13245737expressed protein
LOC_Os05g23340Os.17140.1.S1_x_at1/115+13242739..13245737expressed protein
LOC_Os05g23350OsAffx.14829.2.S1_x_at11/115+13250477..13252563endo-1,4-beta-xylanase, putative
LOC_Os05g23350OsAffx.14829.1.S1_x_at3/115+13250477..13252563endo-1,4-beta-xylanase, putative
LOC_Os05g23360NANA5+13260817..13262418transposon protein, putative, unclassified
LOC_Os05g23370NANA5+13264549..13274493retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12229.1.S1_at--356--1251Chr05:13243737..13243761 (25 bp)
AGTTGTAGCTCTTCCACTTGCTGAT
LOC_Os05g23340
OsAffx.12229.1.S1_at--392--10712Chr04:24236596..24236758 (25 bp)
TTGCTGATTGGCCAACACCTGAAAA
LOC_Os04g41220
OsAffx.12229.1.S1_at--653--8951Chr05:13243665..13243689 (25 bp)
TGACATACATGAGGTGCCATCCACT
LOC_Os05g23340
OsAffx.12229.1.S1_at--874--4432Chr04:24236690..24236714 (25 bp)
GCCATCTCAGGCTACTATATCTCAG
LOC_Os04g41220
OsAffx.12229.1.S1_at--1138--231Chr05:13243610..13243634 (25 bp)
ATATCTCAGCCTAGCAGTAGCACAC
LOC_Os05g23340
OsAffx.12229.1.S1_at--670--6311Chr05:13243526..13243550 (25 bp)
GATGAAGGCATCTACTCCGATGATG
LOC_Os05g23340
OsAffx.12229.1.S1_at--792--5931Chr05:13243475..13243499 (25 bp)
GAGCATGAGCGTACTGATGTGCCTA
LOC_Os05g23340
OsAffx.12229.1.S1_at--1120--6111Chr05:13242946..13242970 (25 bp)
GAGTGTGCTGATGCCACTACCAGCA
LOC_Os05g23340
OsAffx.12229.1.S1_at--96--9991Chr05:13242929..13242953 (25 bp)
TACCAGCACTAGCACCTGACAAGTG
LOC_Os05g23340
OsAffx.12229.1.S1_at--1147--8851Chr05:13242832..13242856 (25 bp)
TGATGCTACACCTTTGGCTCAAATC
LOC_Os05g23340
OsAffx.12229.1.S1_at--438--2331Chr05:13242798..13242822 (25 bp)
AAAGTTGTTCCCGTGACTCCAGATA
LOC_Os05g23340
Target Sequence 
AGTTGTAGCTCTTCCACTTGCTGATTGGCCAACACCTGAAAAGATAGCTAGTGGGACAGTACATAATGCGGCTGACATAC
ATGAGGTGCCATCCACTCCATCTCTTGCAGTGCCATCTCAGGCTACTATATCTCAGCCTAGCAGTAGCACACAACTTGTT
GATAAGTACTTAGCAAATCCATTTAAACAAAATGAACATGTTGGTGTTGATGATGAAGGCATCTACTCCGATGATGAAAT
TGTTGCGGTTACTGCTGATGGTGAGCATGAGCGTACTGATGTGCCTAAGGTATCAAGATCAGTGACAGGATCCAACCAAC
CGGAACCTTTGAGTGTGCTGATGCCACTACCAGCACTAGCACCTGACAAGTGCAAGGCCAAGGCCAAACCCAAGACAAAG
ACTAAAGCCAAGGTAGCCACTAAGAAAAACAAGGAAGATAGCACTGATGCTACACCTTTGGCTCAAATCAAGCGAAAAAA
AGTTGTTCCCGTGACTCCAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis