Browse Element(s) Details


OsAffx.12250.2.S1_at

Description tigr:9630.m02692
TID=OsAffx.12250.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2828011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28210OsAffx.24473.1.S1_at11/112+16693441..16693728hypothetical protein
LOC_Os02g28220Os.8902.1.S1_at11/112+16696291..16698079Transferase family protein, expressed
LOC_Os02g28230NANA2+16701068..16701373hypothetical protein
LOC_Os02g28240OsAffx.12252.1.S1_at11/112+16701967..16703216Transferase family protein
LOC_Os02g28240OsAffx.12252.3.S1_x_at2/112+16701967..16703216Transferase family protein
LOC_Os02g28250Os.26886.6.S1_s_at9/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250Os.26886.2.S1_s_at8/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250OsAffx.3425.1.S1_at1/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250OsAffx.5348.1.S1_at1/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28260Os.26886.3.S1_x_at4/112+16708471..16709810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28270NANA2+16712881..16713213hypothetical protein
LOC_Os02g28280OsAffx.12250.2.S1_at11/112+16715345..16717026hypothetical protein
LOC_Os02g28280OsAffx.12250.1.S1_at5/112+16715345..16717026hypothetical protein
LOC_Os02g28290OsAffx.2774.1.S1_at11/112+16717763..16718276hypothetical protein
LOC_Os02g28300NANA2+16720505..16722125Transferase family protein
LOC_Os02g28310OsAffx.12251.1.S1_at11/112+16726719..16728761hypothetical protein
LOC_Os02g28320NANA2+16730663..16733116retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28330OsAffx.20387.1.S1_x_at2/112+16734046..16740439retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12250.2.S1_at--76--831Chr02:16716825..16716849 (25 bp)
ATGGTTCTCATGAGCTGTTGTCCCA
LOC_Os02g28280
OsAffx.12250.2.S1_at--435--3872Chr05:17953691..17953711 (21 bp)
CTGTTGTCCCATCTGCATGAATTTA
NONE
OsAffx.12250.2.S1_at--570--1351Chr02:16715605..16715625 (21 bp)
AGAGAGCTGAACACTTCGATGTGGC
LOC_Os02g28280
OsAffx.12250.2.S1_at--1134--7031Chr02:16715575..16715599 (25 bp)
GTAAAAAGCCGAGTCTCTGACCTTT
LOC_Os02g28280
OsAffx.12250.2.S1_at--15--6113Chr12:10585837..10585859 (23 bp)
GAGTCTCTGACCTTTTCTCTAAAAA
NONE
OsAffx.12250.2.S1_at--1077--10751Chr02:16715526..16715550 (25 bp)
TTGATGCCGATCTAGAACGTTTCTT
LOC_Os02g28280
OsAffx.12250.2.S1_at--937--5431Chr02:16715512..16715536 (25 bp)
GAACGTTTCTTGCACGAACGATTCA
LOC_Os02g28280
OsAffx.12250.2.S1_at--1055--5571Chr02:16715457..16715481 (25 bp)
GAAATCCTCCGTACAGGTGGTTAAG
LOC_Os02g28280
OsAffx.12250.2.S1_at--1021--2911Chr02:16715417..16715441 (25 bp)
AATCGATTTTCCCAAGCGGACCATA
LOC_Os02g28280
OsAffx.12250.2.S1_at--648--8091Chr02:16715400..16715424 (25 bp)
GGACCATATTCGCTTACAAATCATG
LOC_Os02g28280
OsAffx.12250.2.S1_at--865--3071Chr02:16715382..16715406 (25 bp)
AATCATGGACTGTCATAGGCGTTCA
LOC_Os02g28280
Target Sequence 
ATGGTTCTCATGAGCTGTTGTCCCATCTGCATGAATTTATATTTTGATTTGGATGATATTGAGCTTGTGTTTAGAGGTGT
TAAAGAGGAAATACTTACAAGAAGGAGGTGTGTTCCAGGTGAAAAATGGTGTTGGCTCCCAATTTTGGAGAGAAGATCTT
TTGGTCCAGCTGAAATAACTGAATGGGAGGAACTCAAGAAAGTAATTGATAATCTGGAGACTTCCCCTGTTCCTGACACT
TTACTTTGGGGCCTAGCTACTAACAAGAAATATACCACCAAATCTATGTACAGGACCCTGACCTTTAGGGGTATAAGAGA
GCTGAACACTTCGATGTGGCTTTCAGTAAAAAGCCGAGTCTCTGACCTTTTCTCTAAAAAAAATTTGGATGATATTGATG
CCGATCTAGAACGTTTCTTGCACGAACGATTCAAGAATTTGAATATTGTTTTGTTTTTCTCCGGAAATCCTCCGTACAGG
TGGTTAAGGTTTTCATCTATTACAATCGATTTTCCCAAGCGGACCATATTCGCTTACAAATCATGGACTGTCATAGGCGT
TCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12250.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis