Browse Element(s) Details


OsAffx.12307.1.S1_at

Description tigr:9630.m02996
TID=OsAffx.12307.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3121011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31170NANA2+18661025..18663965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g31180NANA2+18664282..18669924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g31190Os.46012.2.S1_x_at9/112+18672422..18678375retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g31190Os.46012.3.S1_x_at7/112+18672422..18678375retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g31190Os.27088.1.A1_x_at5/112+18672422..18678375retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g31190Os.54691.1.S1_x_at1/112+18672422..18678375retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g31200OsAffx.2817.1.S1_at8/112+18685109..18685599hypothetical protein
LOC_Os02g31210OsAffx.12307.1.S1_at11/112+18687178..18688101hypothetical protein
LOC_Os02g31220Os.4783.1.S1_a_at11/112+18699833..18706481expressed protein
LOC_Os02g31220Os.20810.3.S1_x_at1/112+18699833..18706481expressed protein
LOC_Os02g31220OsAffx.28409.1.S1_at1/112+18699833..18706481expressed protein
LOC_Os02g31230Os.54546.1.S1_at10/112+18708235..18712077expressed protein
LOC_Os02g31230Os.57340.1.S1_at10/112+18708235..18712077expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12307.1.S1_at--647--9252Chr02:18686732..18686762 (25 bp)
TCCTCTCTCATTTTTCGCCTGGATG
NONE
OsAffx.12307.1.S1_at--656--4271Chr02:18688022..18688046 (25 bp)
CCTGGATGTGGATGGCGCTGCGTCT
LOC_Os02g31210
OsAffx.12307.1.S1_at--1077--4131Chr02:18688007..18688031 (25 bp)
CGCTGCGTCTTCGACGCGACAGGGA
LOC_Os02g31210
OsAffx.12307.1.S1_at--121--3371Chr02:18687909..18687933 (25 bp)
CACCGATGCCTGCTGTCGCGCGGAT
LOC_Os02g31210
OsAffx.12307.1.S1_at--958--7831Chr02:18687555..18687579 (25 bp)
GGTACTCGACGGATCCTGTTCTCGT
LOC_Os02g31210
OsAffx.12307.1.S1_at--1085--551Chr02:18687543..18687567 (25 bp)
ATCCTGTTCTCGTCCGGCCGGATGA
LOC_Os02g31210
OsAffx.12307.1.S1_at--262--8932Chr10:21292665..21292689 (25 bp)
TGACCACGCGCGGTGGGAGCAGGGT
NONE
OsAffx.12307.1.S1_at--309--1531Chr02:18687504..18687528 (25 bp)
AGCAGGGTGCTGAGGTCACCGCCGT
LOC_Os02g31210
OsAffx.12307.1.S1_at--766--7251Chr02:18687288..18687490 (25 bp)
GTCCTCGTCGAGTTCGACCACGCGA
LOC_Os02g31210
OsAffx.12307.1.S1_at--361--9351Chr02:18687281..18687302 (22 bp)
TCGAGTTCGACCACGCGAAGACGTA
LOC_Os02g31210
OsAffx.12307.1.S1_at--606--5851Chr02:18687273..18687297 (25 bp)
GACCACGCGAAGACGTACTACATCG
LOC_Os02g31210
Target Sequence 
TCCTCTCTCATTTTTCGCCTGGATGTGGATGGCGCTGCGTCTTCGACGCGACAGGGAGGAAGGCCGGCGTGGCCGGCGGC
TGGCAGGGGAGGAGCGCTGCGGAGAGGAGGGCCGATGTGACGGGCGGCGCCACCGATGCCTGCTGTCGCGCGGATGGCCG
CGGCGGTCGTCCCCCTCAACCGTCGGCCTCGACGCGGCCCAGCAATCTGCTCCCGTCCACACTCCTCTCCATGCACCTCC
GCGCCGGGGACAAGCGGCGCGGCGGTACTCGACGGATCCTGTTCTCGTCCGGCCGGATGACCACGCGCGGTGGGAGCAGG
GTGCTGAGGTCACCGCCGTCGCCGTAGTCGTCGTCCTCGTCGAGTTCGACCACGCGAAGACGTACTACATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis