Browse Element(s) Details


OsAffx.12312.1.S1_at

Description tigr:9630.m03027
TID=OsAffx.12312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g320209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31960Os.37797.1.A1_s_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31960Os.37797.1.A1_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31970NANA2+18891680..18896222retrotransposon protein, putative, unclassified
LOC_Os02g31980OsAffx.12311.1.S1_x_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative
LOC_Os02g31980OsAffx.12311.1.S1_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative
LOC_Os02g31990NANA2+18897951..18898370hypothetical protein
LOC_Os02g32000OsAffx.2823.1.S1_at11/112+18899590..18899823hypothetical protein
LOC_Os02g32000OsAffx.2823.1.S1_x_at11/112+18899590..18899823hypothetical protein
LOC_Os02g32009NANA2+18903070..18903450NA
LOC_Os02g32020OsAffx.12312.1.S1_at9/112+18905133..18907062expressed protein
LOC_Os02g32030Os.4705.1.S1_at11/112+18911065..18915987Elongation factor 2, putative, expressed
LOC_Os02g32040NANA2+18917753..18918472AP2 domain containing protein
LOC_Os02g32050OsAffx.12313.1.S1_at10/112+18925775..18927141hypothetical protein
LOC_Os02g32060Os.7494.1.S1_at11/112+18930451..18933648Nudix hydrolase 13, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12312.1.S1_at--984--6571Chr02:18905199..18905223 (25 bp)
GATTCGCCCTGGATCTCGATGCCGA
LOC_Os02g32020
OsAffx.12312.1.S1_at--107--9491Chr02:18905212..18905236 (25 bp)
TCTCGATGCCGAGTTTGGATCTGGA
LOC_Os02g32020
OsAffx.12312.1.S1_at--705--4051Chr02:18905215..18905239 (25 bp)
CGATGCCGAGTTTGGATCTGGAGAT
LOC_Os02g32020
OsAffx.12312.1.S1_at--1056--531NONE
ATCCTCCCGCTGAAACTACGTAAGA
NONE
OsAffx.12312.1.S1_at--300--9311NONE
TCCCGCTGAAACTACGTAAGAACAT
NONE
OsAffx.12312.1.S1_at--865--8591Chr02:18906884..18906908 (25 bp)
TGGTCATTATCCTCGACATGTCTGC
LOC_Os02g32020
OsAffx.12312.1.S1_at--632--10431Chr02:18906890..18906914 (25 bp)
TTATCCTCGACATGTCTGCCGTCAA
LOC_Os02g32020
OsAffx.12312.1.S1_at--535--2111Chr02:18906899..18906923 (25 bp)
ACATGTCTGCCGTCAACGCACGTCG
LOC_Os02g32020
OsAffx.12312.1.S1_at--1156--7231Chr02:18906920..18906944 (25 bp)
GTCGCCAGCGGCCAAACACAAAGAG
LOC_Os02g32020
OsAffx.12312.1.S1_at--1067--8931Chr02:18906951..18906975 (25 bp)
TGACGCAGAGATGTCGACCCAGGAC
LOC_Os02g32020
OsAffx.12312.1.S1_at--711--4991Chr02:18907008..18907032 (25 bp)
GCAGGCGATGCCAAAAATCTTCACG
LOC_Os02g32020
Target Sequence 
GATTCGCCCTGGATCTCGATGCCGAGTTTGGATCTGGAGATGCGGGGTCGCATCCTCCCGCTGAAACTACGTAAGAACAT
GAGAAGATTATGCCAGTGGTGGTGGTGCCACTGGAATGGCATCCTGGTCATTATCCTCGACATGTCTGCCGTCAACGCAC
GTCGCCAGCGGCCAAACACAAAGAGCAGGGGTGACGCAGAGATGTCGACCCAGGACGAGCACACCACAATTGATGACCGG
CTTCGGTGGCAGGCGATGCCAAAAATCTTCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis