Browse Element(s) Details


OsAffx.12324.1.S1_at

Description tigr:9630.m03135
TID=OsAffx.12324.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Eukaryotic-type carbonic anhydrase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3303011/11Eukaryotic-type carbonic anhydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32990NANA2+19608212..19609204expressed protein
LOC_Os02g33000Os.53440.1.S1_at10/112+19613375..19617976Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g33010Os.7691.1.S1_s_at11/112+19617191..19622802expressed protein
LOC_Os02g33020OsAffx.24550.1.S1_at10/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33020Os.57395.1.S1_at1/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33030Os.39131.1.A1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33030OsAffx.12324.1.S1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33040OsAffx.12325.1.S1_at11/112+19636332..19636992hypothetical protein
LOC_Os02g33050NANA2+19637781..19638326hypothetical protein
LOC_Os02g33060Os.9930.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33060OsAffx.12326.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33070Os.9283.1.S1_at2/112+19643061..19643496hypothetical protein
LOC_Os02g33080Os.4756.1.S1_at11/112+19644045..19647588hydrolase, carbon-nitrogen family protein, expressed
LOC_Os02g33090OsAffx.2837.1.S1_at11/112+19648050..19648574expressed protein
LOC_Os02g33090OsAffx.2837.1.S1_x_at11/112+19648050..19648574expressed protein
LOC_Os02g33100OsAffx.12327.1.S1_at11/112+19654414..19654755hypothetical protein
LOC_Os02g33100OsAffx.12327.1.S1_x_at11/112+19654414..19654755hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006730biological_processone-carbon compound metabolism
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12324.1.S1_at--900--9811Chr02:19631225..19631249 (25 bp)
TACAACCCAAAGTTGGAGCCCCTTG
LOC_Os02g33030
OsAffx.12324.1.S1_at--137--8091Chr02:19631239..19631263 (25 bp)
GGAGCCCCTTGAAATGGATTATACT
LOC_Os02g33030
OsAffx.12324.1.S1_at--131--331Chr02:19631259..19631283 (25 bp)
ATACTGCTGCAAACACTACCATTGT
LOC_Os02g33030
OsAffx.12324.1.S1_at--1158--751Chr02:19631289..19631735 (25 bp)
ATGTCTTCAATATTGCGCTACGTTA
LOC_Os02g33030
OsAffx.12324.1.S1_at--1050--6751Chr02:19631732..19631756 (25 bp)
GTTACAACGACACTGCTGGGACTGT
LOC_Os02g33030
OsAffx.12324.1.S1_at--185--1971Chr02:19631781..19631805 (25 bp)
ACTGAGGCAATTGCATTGGCACTCT
LOC_Os02g33030
OsAffx.12324.1.S1_at--208--3291Chr02:19631925..19631946 (22 bp)
CAAAGGTTTGCAGTGGAGCTCCACA
LOC_Os02g33030
OsAffx.12324.1.S1_at--532--7131Chr02:19631979..19632003 (25 bp)
GTCATTGCAGTCCTTTATCGACATG
LOC_Os02g33030
OsAffx.12324.1.S1_at--820--8151Chr02:19632004..19632028 (25 bp)
GGAAACCTGATCCATTTCTTTTTCA
LOC_Os02g33030
OsAffx.12324.1.S1_at--855--8311Chr02:19632451..19632475 (25 bp)
GGCTGCATTATACTTAGAGGGCTGT
LOC_Os02g33030
OsAffx.12324.1.S1_at--718--2631Chr02:19632492..19632516 (25 bp)
AACCTCTTCCTGTTGGACTCGTGGA
LOC_Os02g33030
Target Sequence 
TACAACCCAAAGTTGGAGCCCCTTGAAATGGATTATACTGCTGCAAACACTACCATTGTTGACAATGTCTTCAATATTGC
GCTACGTTACAACGACACTGCTGGGACTGTGAAGGTGGATGGGAAAAAGTATAAACTGAGGCAATTGCATTGGCACTCTC
CCTCAGAGCACACCATCAATGGCCAAAGGTTTGCAGTGGAGCTCCACATGGTTCACCATTCTGATGATGGCAACATTACT
GTCATTGCAGTCCTTTATCGACATGGGAAACCTGATCCATTTCTTTTTCAGATAAAGGATAAGTTGGCTGCATTATACTT
AGAGGGCTGTAAAGCGGAGAAAGGCGAACCTCTTCCTGTTGGACTCGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis