Browse Element(s) Details


OsAffx.12343.1.S1_at

Description tigr:9630.m03247
TID=OsAffx.12343.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3414011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34090OsAffx.2854.1.S1_at11/112+20386995..20387274hypothetical protein
LOC_Os02g34100OsAffx.12342.1.S1_at11/112+20391681..20392023hypothetical protein
LOC_Os02g34120Os.47631.1.S1_at9/112+20402512..20405911expressed protein
LOC_Os02g34120Os.38113.1.S2_at2/112+20402512..20405911expressed protein
LOC_Os02g34130NANA2+20407269..20410477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34140OsAffx.12343.1.S1_at11/112+20411524..20411889hypothetical protein
LOC_Os02g34150OsAffx.12344.1.S1_at10/112+20416359..20418176hypothetical protein
LOC_Os02g34160NANA2+20420699..20428258transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34170NANA2+20431336..20434560transposon protein, putative, unclassified
LOC_Os02g34180NANA2+20435190..20441348transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12343.1.S1_at--117--9251Chr02:20411563..20411587 (25 bp)
TCCTTGAGCTCGAGCCCATTGGATA
LOC_Os02g34140
OsAffx.12343.1.S1_at--947--8571Chr02:20411588..20411612 (25 bp)
TGGTTATATATGGTGCCAGCGCCAG
LOC_Os02g34140
OsAffx.12343.1.S1_at--455--4411Chr02:20411608..20411632 (25 bp)
GCCAGCACCGTTGATGCTCGCGGAT
LOC_Os02g34140
OsAffx.12343.1.S1_at--1157--6171Chr02:20411636..20411660 (25 bp)
GAGGACACCGCCGAATCTCACGAGT
LOC_Os02g34140
OsAffx.12343.1.S1_at--333--5631Chr02:20411639..20411663 (25 bp)
GACACCGCCGAATCTCACGAGTGGG
LOC_Os02g34140
OsAffx.12343.1.S1_at--456--8031Chr02:20411663..20411687 (25 bp)
GGAGGGCGCTACTACTGCAGCTCGC
LOC_Os02g34140
OsAffx.12343.1.S1_at--1153--9891Chr02:20411672..20411696 (25 bp)
TACTACTGCAGCTCGCGGGTGGGAA
LOC_Os02g34140
OsAffx.12343.1.S1_at--332--1631Chr02:20411704..20411728 (25 bp)
AGCGGCAGCGCGGAAAGGGCTCAGC
LOC_Os02g34140
OsAffx.12343.1.S1_at--159--8251Chr02:20411769..20411793 (25 bp)
GGCATCGATGGTTCTTGACGGTAGA
LOC_Os02g34140
OsAffx.12343.1.S1_at--583--9571Chr02:20411781..20411805 (25 bp)
TCTTGACGGTAGAGCCGCAGGACAC
LOC_Os02g34140
OsAffx.12343.1.S1_at--348--4171Chr02:20411829..20411853 (25 bp)
CGCCAGCGGGCCTTGTGAGCTGCAC
LOC_Os02g34140
Target Sequence 
TCCTTGAGCTCGAGCCCATTGGATATGGTTATATATGGTGCCAGCGCCAGCACCGTTGATGCTCGCGGATGGGGAGGACA
CCGCCGAATCTCACGAGTGGGGAGGGCGCTACTACTGCAGCTCGCGGGTGGGAAGGGAGAGAGCGGCAGCGCGGAAAGGG
CTCAGCGGCGCAAGGAAGGAGGCAGCGGCAACAAAGCAGGGAAAGGGGCATCGATGGTTCTTGACGGTAGAGCCGCAGGA
CACGGGGCAGCGAGGTGGGGATCCGGCGCCAGCGGGCCTTGTGAGCTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis