Browse Element(s) Details


OsAffx.12373.1.S1_at

Description tigr:9630.m03481
TID=OsAffx.12373.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3646011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36414Os.50119.1.S1_at11/112+21989655..21996650Sugar transporter family protein, expressed
LOC_Os02g36430OsAffx.24598.1.S1_at11/112+21999875..22000123hypothetical protein
LOC_Os02g36440Os.53709.1.S1_at11/112+22001604..22006231Sugar transporter family protein, expressed
LOC_Os02g36450Os.27080.1.S1_at11/112+22007420..22011776Sugar transporter family protein, expressed
LOC_Os02g36460OsAffx.12373.1.S1_at11/112+22014757..22015109hypothetical protein
LOC_Os02g36470NANA2+22020210..22025828retrotransposon protein, putative, unclassified
LOC_Os02g36480NANA2+22026396..22028380hypothetical protein
LOC_Os02g36490Os.21243.1.S1_at11/112+22032795..22036110expressed protein
LOC_Os02g36500Os.5798.1.S1_at10/112+22038030..22041031expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12373.1.S1_at--813--9451Chr02:22014792..22014816 (25 bp)
TCTGGCTCCATTTGCCTCAACTGGC
LOC_Os02g36460
OsAffx.12373.1.S1_at--501--4451Chr02:22014805..22014829 (25 bp)
GCCTCAACTGGCACCAGGGATAGAG
LOC_Os02g36460
OsAffx.12373.1.S1_at--533--3471Chr02:22014819..22014843 (25 bp)
CAGGGATAGAGAGGACGTCGACTTC
LOC_Os02g36460
OsAffx.12373.1.S1_at--305--8611Chr02:22014860..22014884 (25 bp)
TGGTCCTCTACAAGTGCGGTCGCTT
LOC_Os02g36460
OsAffx.12373.1.S1_at--670--9851Chr02:22014868..22014945 (25 bp)
TACAAGTGCGGTCGCTTGCATGCCA
LOC_Os02g36460
OsAffx.12373.1.S1_at--1160--9131Chr02:22014874..22014951 (25 bp)
TGCGGTCGCTTGCATGCCATCCAAG
LOC_Os02g36460
OsAffx.12373.1.S1_at--806--8811Chr02:22014959..22014983 (25 bp)
TGTTGAACCTCGCATGCCATCCAAG
LOC_Os02g36460
OsAffx.12373.1.S1_at--200--3471Chr02:22015015..22015039 (25 bp)
CAGGGAAGCGCAGTGGCAACAAGTT
LOC_Os02g36460
OsAffx.12373.1.S1_at--1070--8491Chr02:22015028..22015052 (25 bp)
TGGCAACAAGTTGCTGATCGTGGTG
LOC_Os02g36460
OsAffx.12373.1.S1_at--986--4731Chr02:22015040..22015064 (25 bp)
GCTGATCGTGGTGTTCTACCACAGT
LOC_Os02g36460
OsAffx.12373.1.S1_at--446--3711Chr02:22015055..22015079 (25 bp)
CTACCACAGTGGTGCGTTCACCATA
LOC_Os02g36460
Target Sequence 
TCTGGCTCCATTTGCCTCAACTGGCACCAGGGATAGAGAGGACGTCGACTTCTTCTTCTTCCCCTTCCTGGTCCTCTACA
AGTGCGGTCGCTTGCATGCCATCCAAGGACTACTTGTTGAACCTCGCATGCCATCCAAGGACTACTTGTTGAACCTCGCC
AACCTCACGGCAGGGAAGCGCAGTGGCAACAAGTTGCTGATCGTGGTGTTCTACCACAGTGGTGCGTTCACCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis