Browse Element(s) Details


OsAffx.12460.1.S1_at

Description tigr:9630.m04095
TID=OsAffx.12460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g427209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42660Os.23411.1.S1_at11/112+25654427..25658462Fatty acid desaturase family protein, expressed
LOC_Os02g42670Os.10646.1.S1_at11/112+25659145..25665764expressed protein
LOC_Os02g42690Os.49563.2.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.3.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.51441.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.4.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42700Os.37995.1.S1_at10/112+25673843..25677732thioredoxin family protein, expressed
LOC_Os02g42710Os.23529.1.A1_at11/112+25678175..25681226Elicitor-responsive protein 3, putative, expressed
LOC_Os02g42720OsAffx.12460.1.S1_at9/112+25683447..25684411hypothetical protein
LOC_Os02g42730Os.12078.1.S1_at11/112+25688048..25690666expressed protein
LOC_Os02g42740Os.52752.1.S1_at10/112+25691080..25692876Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os02g42750NANA2+25703665..25709364retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12460.1.S1_at--710--4251Chr02:25684357..25684381 (25 bp)
CCGGTGGTCATGTTCTTGGTGGTGG
LOC_Os02g42720
OsAffx.12460.1.S1_at--800--1051Chr02:25684314..25684338 (25 bp)
AGGTGGTGACCTTGGGCTACGGCTG
LOC_Os02g42720
OsAffx.12460.1.S1_at--207--7591Chr02:25684301..25684325 (25 bp)
GGGCTACGGCTGCAGAGCTCTCAAA
LOC_Os02g42720
OsAffx.12460.1.S1_at--49--9051Chr02:25684291..25684315 (25 bp)
TGCAGAGCTCTCAAACAGGCGGACT
LOC_Os02g42720
OsAffx.12460.1.S1_at--280--9711Chr02:25684281..25684305 (25 bp)
TCAAACAGGCGGACTGCGCGATGGC
LOC_Os02g42720
OsAffx.12460.1.S1_at--52--1091NONE
AGGGCAGCGATGTACGGCCGACAAA
NONE
OsAffx.12460.1.S1_at--992--6271NONE
GATGTACGGCCGACAAACGAAAGAA
NONE
OsAffx.12460.1.S1_at--208--2591Chr02:25683534..25683558 (25 bp)
AACGAAAGAATGCTGGCCAAAATTT
LOC_Os02g42720
OsAffx.12460.1.S1_at--425--5271Chr02:25683527..25683551 (25 bp)
GAATGCTGGCCAAAATTTGTCAAAG
LOC_Os02g42720
OsAffx.12460.1.S1_at--620--2491Chr02:25683491..25683515 (25 bp)
AACAGGTTTTGTTCCATCGATCAAG
LOC_Os02g42720
OsAffx.12460.1.S1_at--909--10391Chr02:25683485..25683509 (25 bp)
TTTTGTTCCATCGATCAAGGTTGTC
LOC_Os02g42720
Target Sequence 
CCGGTGGTCATGTTCTTGGTGGTGGTGCTGCTGTTGGCGAACGAGGTGGTGACCTTGGGCTACGGCTGCAGAGCTCTCAA
ACAGGCGGACTGCGCGATGGCGGCCACGCCGAAGCACGGCGGCACGGTGCTGATGCGAGCGGCGGCGCCGCCCGGCCCCG
GCGAGTCGAGGGCAGCGATGTACGGCCGACAAACGAAAGAATGCTGGCCAAAATTTGTCAAAGAGCATGAGAAAAACAGG
TTTTGTTCCATCGATCAAGGTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis