Browse Element(s) Details


OsAffx.12471.1.S1_at

Description tigr:9630.m04153
TID=OsAffx.12471.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4321011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43160NANA2+26015629..26016090hypothetical protein
LOC_Os02g43170Os.53236.1.S1_at11/112+26021916..26023607B-box zinc finger family protein, expressed
LOC_Os02g43180Os.7703.1.S1_at11/112+26025639..26028031Glutaredoxin family protein, expressed
LOC_Os02g43194Os.2325.1.S1_at11/112+26028467..26035553aldehyde dehydrogenase family protein, expressed
LOC_Os02g43210OsAffx.12471.1.S1_at11/112+26036491..26037270hypothetical protein
LOC_Os02g43220NANA2+26040156..26040812polyamine oxidase, putative
LOC_Os02g43230OsAffx.12472.1.S1_at11/112+26041700..26042164hypothetical protein
LOC_Os02g43240NANA2+26043475..26044888hypothetical protein
LOC_Os02g43250Os.56206.1.S1_at11/112+26046964..26048295Leucine Rich Repeat family protein, expressed
LOC_Os02g43260OsAffx.20387.1.S1_x_at3/112+26051049..26056208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43270OsAffx.31069.5.S1_at5/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.31069.5.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270Os.53479.1.S1_x_at3/112+26056650..26061083retrotransposon protein, putative, unclassified
LOC_Os02g43270OsAffx.26939.1.S1_at1/112+26056650..26061083retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12471.1.S1_at--931--5371Chr02:26036581..26036605 (25 bp)
GAAGAAGCTTGCATGGCAACGGGCT
LOC_Os02g43210
OsAffx.12471.1.S1_at--53--4931Chr02:26036587..26036611 (25 bp)
GCTTGCATGGCAACGGGCTGGATCC
LOC_Os02g43210
OsAffx.12471.1.S1_at--973--4411Chr02:26036624..26036648 (25 bp)
GCCAGATCCCGCTGGGAGCGACGAA
LOC_Os02g43210
OsAffx.12471.1.S1_at--748--2791Chr02:26036718..26036742 (25 bp)
AAGAGGCCACGGGTACAGAGAGCTG
LOC_Os02g43210
OsAffx.12471.1.S1_at--795--1371Chr02:26036736..26036760 (25 bp)
AGAGCTGGCACGGACAATGCTCCGG
LOC_Os02g43210
OsAffx.12471.1.S1_at--108--2231Chr02:26036749..26036773 (25 bp)
ACAATGCTCCGGGTGACCAGTGGTG
LOC_Os02g43210
OsAffx.12471.1.S1_at--1129--4091Chr02:26036796..26036820 (25 bp)
CGACAGTGATGTGGGCGGGCGGCTT
LOC_Os02g43210
OsAffx.12471.1.S1_at--120--7711Chr02:26036828..26036852 (25 bp)
GGGTGCCGTGGGTCATCTGGATGAG
LOC_Os02g43210
OsAffx.12471.1.S1_at--271--5531Chr02:26037177..26037201 (25 bp)
GAAACTTTGTCCTGGCTTCCCAAGA
LOC_Os02g43210
OsAffx.12471.1.S1_at--212--6131Chr02:26037206..26037230 (25 bp)
GAGTGGCGGCACTTTCAAGTGTTAT
LOC_Os02g43210
OsAffx.12471.1.S1_at--200--3331Chr02:26037215..26037239 (25 bp)
CACTTTCAAGTGTTATTCCCTTCTT
LOC_Os02g43210
Target Sequence 
GAAGAAGCTTGCATGGCAACGGGCTGGATCCGGGCCCTCCCACGCCAGATCCCGCTGGGAGCGACGAAGAGGTCACCGCG
GCCGATGGCTGTGGACAAGAGGATGACGGCGGCGAGGCTGGCTCGGTCGGTGGCGGTAAGAGGCCACGGGTACAGAGAGC
TGGCACGGACAATGCTCCGGGTGACCAGTGGTGGCATGAGGAGACGGGCGCGAGGCGACAGTGATGTGGGCGGGCGGCTT
GAGGCGGGGGTGCCGTGGGTCATCTGGATGAGGTGGCGGCGATGGTGGTATCGTGAGGGGGGGAAACTTTGTCCTGGCTT
CCCAAGACGGGGAGTGGCGGCACTTTCAAGTGTTATTCCCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis