Browse Element(s) Details


OsAffx.12477.1.A1_at

Description tigr:9630.m04187
TID=OsAffx.12477.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g435102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43460OsAffx.12476.1.S1_at11/112+26227039..26232421Helicase conserved C-terminal domain containing protein
LOC_Os02g43470Os.8131.1.S1_at11/112+26234257..26237113Glutamate dehydrogenase A, putative, expressed
LOC_Os02g43480Os.25217.1.S1_at11/112+26237799..26240283expressed protein
LOC_Os02g43490OsAffx.24701.1.S1_at9/112+26240930..26242296hypothetical protein
LOC_Os02g43490OsAffx.13010.1.S1_x_at1/112+26240930..26242296hypothetical protein
LOC_Os02g43500Os.14058.1.S1_at11/112+26242755..26246139chaperone protein dnaJ, putative, expressed
LOC_Os02g43510OsAffx.12477.1.A1_at2/112+26247149..26247875hypothetical protein
LOC_Os02g43519Os.37365.1.S1_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S2_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S3_at11/112+26256778..26259797expressed protein
LOC_Os02g43530OsAffx.24702.1.S1_at11/112+26261565..26261858hypothetical protein
LOC_Os02g43540Os.1327.1.S1_at11/112+26265812..26266785expressed protein
LOC_Os02g43540OsAffx.24703.1.S1_s_at11/112+26265812..26266785expressed protein
LOC_Os02g43550Os.55804.1.S1_at11/112+26269531..26271815cyclin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006005biological_processL-fucose biosynthesis
GO:0042350biological_processGDP-L-fucose biosynthesis
GO:0003824molecular_functioncatalytic activity
GO:0050577molecular_functionGDP-L-fucose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12477.1.A1_at--784--3331Chr02:26247960..26247984 (25 bp)
CACGACGGCGGTGATTGCGACTGTC
NONE
OsAffx.12477.1.A1_at--170--5751Chr02:26247957..26247981 (25 bp)
GACGGCGGTGATTGCGACTGTCCCT
NONE
OsAffx.12477.1.A1_at--65--8371Chr02:26247954..26247978 (25 bp)
GGCGGTGATTGCGACTGTCCCTCCT
NONE
OsAffx.12477.1.A1_at--165--7751Chr02:26247951..26247975 (25 bp)
GGTGATTGCGACTGTCCCTCCTCGA
NONE
OsAffx.12477.1.A1_at--552--6591Chr02:26247948..26247972 (25 bp)
GATTGCGACTGTCCCTCCTCGAGTT
NONE
OsAffx.12477.1.A1_at--1048--9211Chr02:26247921..26247945 (25 bp)
TCCACGGGATCGATGAGCTGCCGAG
NONE
OsAffx.12477.1.A1_at--21--1931Chr02:26247918..26247942 (25 bp)
ACGGGATCGATGAGCTGCCGAGCAA
NONE
OsAffx.12477.1.A1_at--969--4792Chr04:10167522..10167546 (25 bp)
GCTCGAGCTCCTGCATGCGGGATCG
NONE
OsAffx.12477.1.A1_at--646--5892Chr04:10167518..10167542 (25 bp)
GAGCTCCTGCATGCGGGATCGACGA
NONE
OsAffx.12477.1.A1_at--875--1791Chr02:26247791..26247815 (25 bp)
ACCGCATCATGGTCGGCTCGGTGGT
LOC_Os02g43510
OsAffx.12477.1.A1_at--998--3551Chr02:26247787..26247811 (25 bp)
CATCATGGTCGGCTCGGTGGTGCAC
LOC_Os02g43510
Target Sequence 
CACGACGGCGGTGATTGCGACTGTCCCTCCTCGAGTTCCTCCACGGGATCGATGAGCTGCCGAGCAAGCTCGAGCTCCTG
CATGCGGGATCGACGAGCCACCACCGGCGATGCCGCCGCCGCCGTGTCCTTCCTCGTCGACAAGTCAGCGAAGGTCTTCA
TCGCCGGCCACCGCATCATGGTCGGCTCGGTGGTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12477.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis