Browse Element(s) Details


OsAffx.12494.1.S1_at

Description tigr:9630.m04314
TID=OsAffx.12494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4458011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44550Os.52949.1.S1_s_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.1.S1_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.2.S1_x_at10/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.52949.1.S1_at1/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44560OsAffx.12493.1.S1_at11/112+27003151..27004148C2 domain containing protein
LOC_Os02g44570Os.52583.1.S1_at11/112+27004568..27009317Mitochondrial carrier protein, expressed
LOC_Os02g44580OsAffx.12494.1.S1_at11/112+27009337..27009837expressed protein
LOC_Os02g44590Os.3768.1.S1_at11/112+27012483..27015850Subtilisin N-terminal Region family protein, expressed
LOC_Os02g44600OsAffx.24724.1.S1_x_at11/112+27017431..27022547U-box domain containing protein, expressed
LOC_Os02g44610NANA2+27023315..27029874Protein kinase domain containing protein, expressed
LOC_Os02g44620OsAffx.12495.1.S1_at8/112+27032599..27034996hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12494.1.S1_at--950--4551Chr02:27009720..27009744 (25 bp)
GCGCTGTGGCGGAGGCTTAGGTGGA
LOC_Os02g44580
OsAffx.12494.1.S1_at--876--6191Chr02:27009709..27009733 (25 bp)
GAGGCTTAGGTGGATCGGCCTTCCT
LOC_Os02g44580
OsAffx.12494.1.S1_at--844--4891Chr02:27009706..27009730 (25 bp)
GCTTAGGTGGATCGGCCTTCCTCGC
LOC_Os02g44580
OsAffx.12494.1.S1_at--676--3911Chr02:27009681..27009705 (25 bp)
CGGCGCTTGCGGACGTACGTCCTCA
LOC_Os02g44580
OsAffx.12494.1.S1_at--661--4911Chr02:27009677..27009701 (25 bp)
GCTTGCGGACGTACGTCCTCAGCGC
LOC_Os02g44580
OsAffx.12494.1.S1_at--678--9411Chr02:27009629..27009653 (25 bp)
TCGGTTACTCCCAGAACTTCGACAA
LOC_Os02g44580
OsAffx.12494.1.S1_at--774--7871Chr02:27009627..27009651 (25 bp)
GGTTACTCCCAGAACTTCGACAACG
LOC_Os02g44580
OsAffx.12494.1.S1_at--127--10451Chr02:27009625..27009649 (25 bp)
TTACTCCCAGAACTTCGACAACGGG
LOC_Os02g44580
OsAffx.12494.1.S1_at--1048--6191Chr02:27009579..27009603 (25 bp)
GAGGCCAACTTCTCGGTCAGGTTCG
LOC_Os02g44580
OsAffx.12494.1.S1_at--686--3251Chr02:27009574..27009598 (25 bp)
CAACTTCTCGGTCAGGTTCGCGCGG
LOC_Os02g44580
OsAffx.12494.1.S1_at--480--10591Chr02:27009570..27009594 (25 bp)
TTCTCGGTCAGGTTCGCGCGGCACG
LOC_Os02g44580
Target Sequence 
GCGCTGTGGCGGAGGCTTAGGTGGATCGGCCTTCCTCGCCGGCGCTTGCGGACGTACGTCCTCAGCGCCAGCGGGCTCAA
CTACGACCCGCTCGGTTACTCCCAGAACTTCGACAACGGGGGCCTCGGCGACGGCGAGTGCGAGGCCAACTTCTCGGTCA
GGTTCGCGCGGCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis