Browse Element(s) Details


OsAffx.12495.1.S1_at

Description tigr:9630.m04318
TID=OsAffx.12495.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g446208/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44570Os.52583.1.S1_at11/112+27004568..27009317Mitochondrial carrier protein, expressed
LOC_Os02g44580OsAffx.12494.1.S1_at11/112+27009337..27009837expressed protein
LOC_Os02g44590Os.3768.1.S1_at11/112+27012483..27015850Subtilisin N-terminal Region family protein, expressed
LOC_Os02g44600OsAffx.24724.1.S1_x_at11/112+27017431..27022547U-box domain containing protein, expressed
LOC_Os02g44610NANA2+27023315..27029874Protein kinase domain containing protein, expressed
LOC_Os02g44620OsAffx.12495.1.S1_at8/112+27032599..27034996hypothetical protein
LOC_Os02g44630Os.37752.1.S1_at10/112+27038450..27041579Aquaporin RWC3, putative, expressed
LOC_Os02g44642Os.49462.1.S1_at11/112+27043049..27056086YDA, putative, expressed
LOC_Os02g44654Os.52745.1.S1_at11/112+27057262..27059364Cytochrome P450 86A2, putative, expressed
LOC_Os02g44654Os.8021.1.S1_x_at1/112+27057262..27059364Cytochrome P450 86A2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12495.1.S1_at--561--5151Chr02:27032632..27032656 (25 bp)
GCAACCTACACGCTGGCAAATCATG
LOC_Os02g44620
OsAffx.12495.1.S1_at--1034--991Chr02:27032666..27032686 (21 bp)
AGGATACAGAATCGCCGAAGGCCCA
LOC_Os02g44620
OsAffx.12495.1.S1_at--540--5291NONE
GAAGGCCCATGCTAATCCAAATTTA
NONE
OsAffx.12495.1.S1_at--339--2371Chr02:27033068..27033092 (25 bp)
AAACCAATGATCTTGCATCTCCCAT
LOC_Os02g44620
OsAffx.12495.1.S1_at--424--471Chr02:27033084..27033108 (25 bp)
ATCTCCCATTATTTGCCTGTTACAT
LOC_Os02g44620
OsAffx.12495.1.S1_at--7--191Chr02:27033094..27033118 (25 bp)
ATTTGCCTGTTACATGTGGTTTGGT
LOC_Os02g44620
OsAffx.12495.1.S1_at--399--8671NONE
TGTGGTTTGGTTTTGCTAAGCTGCT
NONE
OsAffx.12495.1.S1_at--639--10711NONE
TTGCTAAGCTGCTAGACTGTTTCAG
NONE
OsAffx.12495.1.S1_at--592--5271Chr02:27034638..27034662 (25 bp)
GAATGATCTGTTCTTCGGTGGAAAG
LOC_Os02g44620
OsAffx.12495.1.S1_at--876--11Chr02:27034663..27034687 (25 bp)
ATTGAGGTCGTTCAAAGCTCGGGAC
LOC_Os02g44620
OsAffx.12495.1.S1_at--363--4811Chr02:27034679..27034703 (25 bp)
GCTCGGGACCGAAACTGACATGCAT
LOC_Os02g44620
Target Sequence 
GCAACCTACACGCTGGCAAATCATGCAAGATCACAGGATACAGAATCGCCGAAGGCCCATGCTAATCCAAATTTATTTCC
AAATTCCAAACCAATGATCTTGCATCTCCCATTATTTGCCTGTTACATGTGGTTTGGTTTTGCTAAGCTGCTAGACTGTT
TCAGCAGTGAAATATTGGAGAATGATCTGTTCTTCGGTGGAAAGATTGAGGTCGTTCAAAGCTCGGGACCGAAACTGACA
TGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis