Browse Element(s) Details


OsAffx.12500.1.S1_s_at

Description tigr:9630.m04348
TID=OsAffx.12500.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AJ245900., putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4489011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44870Os.12167.1.S1_at11/112+27159565..27161029Dehydrin family protein, expressed
LOC_Os02g44880Os.17797.1.A1_at11/112+27177060..27180836expressed protein
LOC_Os02g44880OsAffx.12499.1.S1_at11/112+27177060..27180836expressed protein
LOC_Os02g44890Os.36087.1.A1_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_s_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_at10/112+27182151..27186029expressed protein
LOC_Os02g44900OsAffx.24732.1.S1_x_at11/112+27198671..27201866expressed protein
LOC_Os02g44900Os.24379.1.A1_at10/112+27198671..27201866expressed protein
LOC_Os02g44910Os.11855.1.S1_at8/112+27201920..27206769MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os02g44920OsAffx.2960.1.S1_x_at11/112+27209372..27211850Protein kinase APK1A, chloroplast precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12500.1.S1_s_at--263--6511Chr02:27183603..27183627 (25 bp)
GATATATATCGATCACCTTTCTCCT
LOC_Os02g44890
OsAffx.12500.1.S1_s_at--585--5391Chr02:27183557..27183581 (25 bp)
GAAGCAGCTATTTCCCAGTGTGCAC
LOC_Os02g44890
OsAffx.12500.1.S1_s_at--817--5091Chr02:27183536..27183560 (25 bp)
GCACGCGTTGTCAATGTGGACTTCA
LOC_Os02g44890
OsAffx.12500.1.S1_s_at--825--3571Chr02:27183493..27183517 (25 bp)
CATATGATATTCCTTCTGCTGCGTT
LOC_Os02g44890
OsAffx.12500.1.S1_s_at--439--3651Chr02:27183481..27183505 (25 bp)
CTTCTGCTGCGTTGGTGGAACTAGA
LOC_Os02g44890
OsAffx.12500.1.S1_s_at--1060--4831Chr02:27183443..27183467 (25 bp)
GCTAAGGCTGCTATCGACTTGATGA
LOC_Os02g44890
OsAffx.12500.1.S1_s_at--900--9731Chr02:27183403..27183427 (25 bp)
TAATCGGTGGAAAGCCAAGGCCTGT
LOC_Os02g44890
OsAffx.12500.1.S1_s_at--1035--4471Chr02:27183384..27183408 (25 bp)
GCCTGTAAGAGCTATCTATGCAAAG
LOC_Os02g44890
OsAffx.12500.1.S1_s_at--1143--651Chr02:27183358..27183382 (25 bp)
ATGAAATGTTTCTGGATCGGCCTCC
LOC_Os02g44890
OsAffx.12500.1.S1_s_at--813--5271Chr02:27183271..27183295 (25 bp)
GAATGAACAAACTGCGGCTCCTTGC
LOC_Os02g44890
OsAffx.12500.1.S1_s_at--664--5271Chr02:27182502..27182526 (25 bp)
GAATGATATCAAGAACCTCTCTCGC
LOC_Os02g44890
Target Sequence 
GATATATATCGATCACCTTTCTCCTCAAGTCACAAGCTCAGTAATTGAAGCAGCTATTTCCCAGTGTGCACGCGTTGTCA
ATGTGGACTTCATTGTTAATTACACAATCCCATATGATATTCCTTCTGCTGCGTTGGTGGAACTAGATGATGAAATACAA
GCTAAGGCTGCTATCGACTTGATGAATAATTTCCCTTTCATAATCGGTGGAAAGCCAAGGCCTGTAAGAGCTATCTATGC
AAAGCATGAAATGTTTCTGGATCGGCCTCCTCGCCCTGGAATCAAGAAAGAGTTCCAGTGGGTGAAACAAGAAGATGGAA
TAGAGTATGAAGGAATGAACAAACTGCGGCTCCTTGCAAGAAGGCAGGAAACAGAAAATATGGCACTCATAAAGATAGCA
TGTGAGAAAATATTTTCATTTGGCTGTTCCCTTCCCCAGAATCTATTGGAAGAGGACAAGGACCTAGCAAAGCAGCAACA
GGAGTTACTTGATGGAATTTACAAGAAGTACTGCATACTAGACAGTGACGTGATGAATGATATCAAGAACCTCTCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12500.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis