Browse Element(s) Details


OsAffx.12513.1.S1_at

Description tigr:9630.m04460
TID=OsAffx.12513.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4595010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45900OsAffx.2975.1.S1_at11/112+27964235..27966164hypothetical protein
LOC_Os02g45910OsAffx.12696.1.S1_at11/112+27971718..27973941tRNA-splicing endonuclease positive effector, putative
LOC_Os02g45920Os.17229.1.S1_at10/112+27979070..27983486expressed protein
LOC_Os02g45930Os.49582.1.S1_at11/112+27983621..27984706expressed protein
LOC_Os02g45940OsAffx.24745.1.S1_at11/112+27988208..27988861Histone H4, putative, expressed
LOC_Os02g45950OsAffx.12513.1.S1_at10/112+27989249..27992709expressed protein
LOC_Os02g45960Os.35344.18.S1_x_at11/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960Os.35344.3.S1_x_at9/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960OsAffx.22940.5.S1_x_at4/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960OsAffx.22940.5.S1_at3/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45969NANA2+28004107..28005249NA
LOC_Os02g45980Os.54682.1.S1_at10/112+28008953..28014651Regulator of chromosome condensation family protein, expressed
LOC_Os02g45990NANA2+28017283..28020211hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12513.1.S1_at--794--5551Chr02:27990733..27990757 (25 bp)
GAAACCGTACACAAGCTTTTCAAGT
LOC_Os02g45950
OsAffx.12513.1.S1_at--369--7951Chr02:27990771..27990795 (25 bp)
GGATCTGTGGAGATGGACCATTCCG
LOC_Os02g45950
OsAffx.12513.1.S1_at--572--5811Chr02:27990786..27990810 (25 bp)
GACCATTCCGAATAGCAAGGCCTTC
LOC_Os02g45950
OsAffx.12513.1.S1_at--938--2051Chr02:27991195..27991215 (21 bp)
ACTTGTTACTGGAACTGGATCCTGA
LOC_Os02g45950
OsAffx.12513.1.S1_at--824--6371Chr02:27991208..27991232 (25 bp)
GATCCTGAGGAAGTCATTTCTCGTG
LOC_Os02g45950
OsAffx.12513.1.S1_at--6--6251Chr02:27991305..27991329 (25 bp)
GATGTGGCAGGTTCGGTAATTGTCT
LOC_Os02g45950
OsAffx.12513.1.S1_at--877--3171NONE
AATTGTCTGCGCTATGTTGTTCTAA
NONE
OsAffx.12513.1.S1_at--564--4311Chr02:27992135..27992159 (25 bp)
CCTTCTCCAGAAGTATTGGCGCTGT
LOC_Os02g45950
OsAffx.12513.1.S1_at--1035--2751Chr02:27992228..27992251 (24 bp)
AAGACACTACTTCTATCTCTAAGGA
LOC_Os02g45950
OsAffx.12513.1.S1_at--813--7591Chr02:27992366..27992390 (25 bp)
GGGCATCGGAATGCAAGCTCATTTT
LOC_Os02g45950
OsAffx.12513.1.S1_at--918--10771Chr02:27992390..27992414 (25 bp)
TTGTTGAGCGTTACTGAGTTCGACA
LOC_Os02g45950
Target Sequence 
GAAACCGTACACAAGCTTTTCAAGTTTATAGAGGATGGGGATCTGTGGAGATGGACCATTCCGAATAGCAAGGCCTTCAG
CAGTGGCCTGAAAGATTTGGACATTGAGTTTGATGTCAATATCAACAGAAAGTTGTTTGATCAGGCAAGTAACTTGTTAC
TGGAACTGGATCCTGAGGAAGTCATTTCTCGTGGACAAGCAACATTGTCACACAAGCAAAAATTAATTGATGAATGTCTG
GAGAAATCCTATGAAATTGCATTAGGATGTGGCAGGTTCGGTAATTGTCTGCGCTATGTTGTTCTAACACGAACCAATGG
TACCTTCTCCAGAAGTATTGGCGCTGTAGTGTACAAAGTACCTGAGTTGAATAATGACAATATGCTGAAAATAAGTCTTA
GAAGTTTGAACGAGGAAGACACTACTTCTATCTCTAAGGAATACGGTGGTGGGGGGCATCGGAATGCAAGCTCATTTTTG
TTGAGCGTTACTGAGTTCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis