Browse Element(s) Details


OsAffx.12563.1.S1_at

Description tigr:9630.m04830
TID=OsAffx.12563.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=stellacyanin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4935011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49310Os.49207.1.S1_at11/112+30129487..30132803Protein kinase G11A, putative, expressed
LOC_Os02g49320Os.9750.1.S1_at11/112+30133788..30137583sucrase, putative, expressed
LOC_Os02g49326Os.27449.1.S1_at11/112+30138391..30142823SET domain-containing protein, putative, expressed
LOC_Os02g49332OsAffx.3008.1.S1_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.3.S1_x_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.1.S1_a_at11/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49332Os.20406.4.S1_at9/112+30142989..30147946cellulose synthase-like protein CslE, putative, expressed
LOC_Os02g49340OsAffx.3009.1.S1_at11/112+30149093..30150461nitrate-induced NOI protein, putative, expressed
LOC_Os02g49350OsAffx.12563.1.S1_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49350Os.7446.1.S1_s_at11/112+30151732..30152756Plastocyanin-like domain containing protein, expressed
LOC_Os02g49360Os.14816.1.S1_at11/112+30153349..30155848tRNA methyltransferase family protein, expressed
LOC_Os02g49370Os.8891.1.S1_at10/112+30158404..30159572leafy cotyledon1, putative, expressed
LOC_Os02g49380NANA2+30163597..30166399hypothetical protein
LOC_Os02g49390NANA2+30170408..30176634retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12563.1.S1_at--941--891Chr02:30152065..30152089 (25 bp)
AGGCGCCGAGCGGTGCATCTGGCCG
LOC_Os02g49350
OsAffx.12563.1.S1_at--98--4591Chr02:30152039..30152063 (25 bp)
GCGCTCACGGGCTTCTCCATGGCAG
LOC_Os02g49350
OsAffx.12563.1.S1_at--328--9691Chr02:30152035..30152059 (25 bp)
TCACGGGCTTCTCCATGGCAGCAGC
LOC_Os02g49350
OsAffx.12563.1.S1_at--550--3411Chr02:30152017..30152041 (25 bp)
CAGCAGCGCTTCTCGTCGTGTGTGT
LOC_Os02g49350
OsAffx.12563.1.S1_at--354--9431Chr02:30152002..30152026 (25 bp)
TCGTGTGTGTCGTCTCCGTGTTCAT
LOC_Os02g49350
OsAffx.12563.1.S1_at--247--3771Chr02:30151943..30151967 (25 bp)
CTCTCTGTCGGTCGGTAGTATCGTC
LOC_Os02g49350
OsAffx.12563.1.S1_at--773--3871Chr02:30151939..30151963 (25 bp)
CTGTCGGTCGGTAGTATCGTCGGTT
LOC_Os02g49350
OsAffx.12563.1.S1_at--177--9271Chr02:30151936..30151960 (25 bp)
TCGGTCGGTAGTATCGTCGGTTTTG
LOC_Os02g49350
OsAffx.12563.1.S1_at--412--3931Chr02:30151922..30151946 (25 bp)
CGTCGGTTTTGATAGGAATTAATGC
LOC_Os02g49350
OsAffx.12563.1.S1_at--904--10451Chr02:30151775..30151799 (25 bp)
TTAAACCCTTATGGCCTTATGTACG
LOC_Os02g49350
OsAffx.12563.1.S1_at--934--8451Chr02:30151764..30151788 (25 bp)
TGGCCTTATGTACGTAAACCCATTC
LOC_Os02g49350
Target Sequence 
AGGCGCCGAGCGGTGCATCTGGCCGCGCGCTCACGGGCTTCTCCATGGCAGCAGCGCTTCTCGTCGTGTGTGTCGTCTCC
GTGTTCATCTTGGTTTGAGGTTATTTGGAGAGGTTTAATTAGCTCTCTGTCGGTCGGTAGTATCGTCGGTTTTGATAGGA
ATTAATGCTATAATTCTGAGATCCAAGAAGAAGAAGAAGAAGAACGTGTCATGTCATCTCGCGGTAGATGACAGGATCGA
GTCCATTTTTGTTAATTAGGGTGTTCCAATGTTTTGTCTAGGGTACTTAATTAAACCCTTATGGCCTTATGTACGTAAAC
CCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis