Browse Element(s) Details


OsAffx.12604.1.S1_at

Description tigr:9630.m05108
TID=OsAffx.12604.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g519209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51880Os.53073.1.S1_at11/112+31767487..31770532amine oxidase family protein, putative, expressed
LOC_Os02g51890Os.10870.1.S1_at11/112+31775709..31781275RNA recognition motif family protein, expressed
LOC_Os02g51900Os.52310.1.S1_at11/112+31781479..31783150Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S2_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S1_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51920OsAffx.12604.1.S1_at9/112+31793780..31794667hypothetical protein
LOC_Os02g51930Os.53614.1.S1_at11/112+31800108..31801997Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51939Os.54515.1.S1_at1/112+31804623..31805352NA
LOC_Os02g51950Os.47984.1.A1_s_at11/112+31808470..31809740expressed protein
LOC_Os02g51950Os.47984.1.A1_at10/112+31808470..31809740expressed protein
LOC_Os02g51960Os.2987.3.S1_x_at4/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8980.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51960OsAffx.8272.1.S1_at1/112+31812629..31815996transposon protein, putative, unclassified
LOC_Os02g51970Os.7228.1.S1_at10/112+31818263..31819392Phi-1-like phosphate-induced protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12604.1.S1_at--207--4451NONE
GCCTTTGTGAACGTGACAGATAATG
NONE
OsAffx.12604.1.S1_at--1144--8971NONE
TGAACGTGACAGATAATGGAAGCTT
NONE
OsAffx.12604.1.S1_at--912--831Chr02:31794033..31794057 (25 bp)
ATGGAAGCTTTGGAACTCAGGGTCT
LOC_Os02g51920
OsAffx.12604.1.S1_at--730--2691Chr02:31794029..31794053 (25 bp)
AAGCTTTGGAACTCAGGGTCTGTTT
LOC_Os02g51920
OsAffx.12604.1.S1_at--1052--3671Chr02:31794026..31794050 (25 bp)
CTTTGGAACTCAGGGTCTGTTTGGT
LOC_Os02g51920
OsAffx.12604.1.S1_at--714--10851Chr02:31793968..31793992 (25 bp)
TTGGAGCTCAGCCAATTACTCCACC
LOC_Os02g51920
OsAffx.12604.1.S1_at--1087--9651Chr02:31793961..31793985 (25 bp)
TCAGCCAATTACTCCACCTAAAATG
LOC_Os02g51920
OsAffx.12604.1.S1_at--1070--3651Chr02:31793915..31793939 (25 bp)
CTTTCACAAAATGAACTACGGAGGT
LOC_Os02g51920
OsAffx.12604.1.S1_at--198--2291Chr02:31793907..31793931 (25 bp)
AAATGAACTACGGAGGTGGACTTGG
LOC_Os02g51920
OsAffx.12604.1.S1_at--612--5592Chr02:1071635..1071753 (25 bp)
GAAATTGGAGCTCTAACAAACATAC
NONE
OsAffx.12604.1.S1_at--48--8091Chr02:31793823..31793847 (25 bp)
GGAGCTCTAACAAACATACCCTTAC
LOC_Os02g51920
Target Sequence 
GCCTTTGTGAACGTGACAGATAATGGAAGCTTTGGAACTCAGGGTCTGTTTGGTACAGCTCTAGCTCCAGCTCCACCTCT
CTTGGAGTTGGAGCTCAGCCAATTACTCCACCTAAAATGGGAGCCGAGTTGGGTGGAGCTCTTTCACAAAATGAACTACG
GAGGTGGACTTGGGTTTAAGCAGCTGCACAACTCCACTTCAGACCCAACTACTGAAGCTAAATTTAGAAATTGGAGCTCT
AACAAACATACCCTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis