Browse Element(s) Details


OsAffx.12725.1.S1_at

Description tigr:9631.m00286
TID=OsAffx.12725.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g037508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03700Os.4327.1.S1_at11/113+1623489..1627107MLO protein homolog 1, putative, expressed
LOC_Os03g03710Os.24766.1.A1_s_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710Os.24766.1.A1_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710OsAffx.3125.1.S1_at10/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03720Os.4329.1.S1_at11/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03720Os.10732.1.S1_s_at1/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03730OsAffx.24955.1.S1_s_at11/113+1645808..1647611regulatory protein, putative, expressed
LOC_Os03g03740NANA3+1648147..1648488retrotransposon protein, putative, unclassified
LOC_Os03g03750OsAffx.12725.1.S1_at8/113+1649370..1649778hypothetical protein
LOC_Os03g03760OsAffx.12726.1.S1_at11/113+1651176..1656154myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g03770Os.4335.1.S1_at10/113+1663864..1667883NADH-ubiquinone oxidoreductase B18 subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12725.1.S1_at--697--10851Chr03:1649702..1649726 (25 bp)
TTGGAGCGGGCGATCAGGTGAGGAG
LOC_Os03g03750
OsAffx.12725.1.S1_at--813--9311Chr03:1649645..1649669 (25 bp)
TCGCGCTCCCGTGCCTCGTGCTGTA
LOC_Os03g03750
OsAffx.12725.1.S1_at--25--5771Chr03:1649420..1649577 (25 bp)
GACGTCGACCCGGTGCTTGTGATTC
LOC_Os03g03750
OsAffx.12725.1.S1_at--832--1731Chr03:1649419..1649576 (25 bp)
ACGTCGACCCGGTGCTTGTGATTCA
LOC_Os03g03750
OsAffx.12725.1.S1_at--992--3991NONE
CGTCGACCCGGTGCTTGTGATTCAT
NONE
OsAffx.12725.1.S1_at--926--7211NONE
GTCGACCCGGTGCTTGTGATTCATG
NONE
OsAffx.12725.1.S1_at--249--9371Chr03:1649416..1649573 (25 bp)
TCGACCCGGTGCTTGTGATTCATGT
LOC_Os03g03750
OsAffx.12725.1.S1_at--76--4091Chr03:1649415..1649572 (25 bp)
CGACCCGGTGCTTGTGATTCATGTT
LOC_Os03g03750
OsAffx.12725.1.S1_at--1009--5811Chr03:1649414..1649571 (25 bp)
GACCCGGTGCTTGTGATTCATGTTC
LOC_Os03g03750
OsAffx.12725.1.S1_at--907--1791Chr03:1649413..1649570 (25 bp)
ACCCGGTGCTTGTGATTCATGTTCA
LOC_Os03g03750
OsAffx.12725.1.S1_at--892--4191NONE
CCCGGTGCTTGTGATTCATGTTCAT
NONE
Target Sequence 
TTGGAGCGGGCGATCAGGTGAGGAGGGCGAAGACGGCGGCGCTGTTCCTGGCGGCCGTCGCGCTCCCGTGCCTCGTGCTG
TACCGCGCCGCCGTGTCGCCGGCGGGGCTGTTCCTCCGGCCGGCCGCCCTGCCGGCGCCGCCGCGCGGCGACGTCGACCC
GGTGCTTGTGATTCATGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis