Browse Element(s) Details


OsAffx.12739.1.S1_at

Description tigr:9631.m00472
TID=OsAffx.12739.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C2H2 type, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0549011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05450OsAffx.3140.1.S1_at11/113+2674693..2675612expressed protein
LOC_Os03g05460Os.53473.1.S1_at11/113+2677884..2679521expressed protein
LOC_Os03g05470Os.18786.1.S1_at11/113+2686608..2689932Protein kinase domain containing protein, expressed
LOC_Os03g05480Os.25045.1.S1_at11/113+2692428..2695029Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05490OsAffx.12739.1.S1_at11/113+2696842..2697438hypothetical protein
LOC_Os03g05500Os.7112.1.S1_at11/113+2702148..2702946expressed protein
LOC_Os03g05510OsAffx.24980.1.S1_at11/113+2705807..2706670expressed protein
LOC_Os03g05520OsAffx.12740.1.S1_s_at11/113+2718728..2722222expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0010093biological_processspecification of floral organ identity
GO:0016481biological_processnegative regulation of transcription
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12739.1.S1_at--142--4571Chr03:2697215..2697239 (25 bp)
GCACAACGTCGATGGTGTCCCGGGA
LOC_Os03g05490
OsAffx.12739.1.S1_at--547--9311Chr03:2697198..2697222 (25 bp)
TCCCGGGACGACGTGGACTGCTATA
LOC_Os03g05490
OsAffx.12739.1.S1_at--649--8531Chr03:2697185..2697209 (25 bp)
TGGACTGCTATAACCAGCACCGCTA
LOC_Os03g05490
OsAffx.12739.1.S1_at--161--3691Chr03:2697178..2697202 (25 bp)
CTATAACCAGCACCGCTACCTGGAG
LOC_Os03g05490
OsAffx.12739.1.S1_at--578--4491Chr03:2697121..2697145 (25 bp)
GCCGGTGACATCTCCGCCGATGAGC
LOC_Os03g05490
OsAffx.12739.1.S1_at--438--9051Chr03:2697022..2697046 (25 bp)
TGCAGGTAGCAGTGATAGCCATATC
LOC_Os03g05490
OsAffx.12739.1.S1_at--79--311Chr03:2697008..2697032 (25 bp)
ATAGCCATATCAGGGAGCTGAGCCT
LOC_Os03g05490
OsAffx.12739.1.S1_at--10--10171Chr03:2697001..2697025 (25 bp)
TATCAGGGAGCTGAGCCTGCTTGGT
LOC_Os03g05490
OsAffx.12739.1.S1_at--371--9071Chr03:2696984..2697008 (25 bp)
TGCTTGGTGGCGCAGACTCTAGTAC
LOC_Os03g05490
OsAffx.12739.1.S1_at--590--1391Chr03:2696971..2696995 (25 bp)
AGACTCTAGTACTGATCGTGATCAT
LOC_Os03g05490
OsAffx.12739.1.S1_at--190--511Chr03:2696957..2696981 (25 bp)
ATCGTGATCATGACTTGCACCTGCG
LOC_Os03g05490
Target Sequence 
GCACAACGTCGATGGTGTCCCGGGACGACGTGGACTGCTATAACCAGCACCGCTACCTGGAGTACTCTCCTCCTCCTCCT
ACCCCGGCGCCACCGCCGGTGACATCTCCGCCGATGAGCAGCAGCTTCGCCGCCACGTCCTACGCCGGCGGCACGGCAAC
GGTGGCCGGAGTGGACGGGGAAGCCATGCGCGCTGCAGGTAGCAGTGATAGCCATATCAGGGAGCTGAGCCTGCTTGGTG
GCGCAGACTCTAGTACTGATCGTGATCATGACTTGCACCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis