Browse Element(s) Details


OsAffx.12769.1.S1_at

Description tigr:9631.m00705
TID=OsAffx.12769.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0770011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07650Os.57326.1.S1_at11/113+3868676..3869418expressed protein
LOC_Os03g07660OsAffx.25011.1.S1_at11/113+3872158..3872520hypothetical protein
LOC_Os03g07670NANA3+3873943..3877272transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07680Os.45976.1.S1_x_at3/113+3879573..3883226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07690NANA3+3889584..3890018hypothetical protein
LOC_Os03g07700OsAffx.12769.1.S1_at11/113+3890769..3891122hypothetical protein
LOC_Os03g07710OsAffx.3167.1.S1_at11/113+3895162..3895670hypothetical protein
LOC_Os03g07720OsAffx.3168.1.S1_at9/113+3897711..3903651hypothetical protein
LOC_Os03g07730OsAffx.12770.1.S1_at11/113+3904351..3905698hypothetical protein
LOC_Os03g07740NANA3+3914200..3914762hypothetical protein
LOC_Os03g07750Os.53989.1.S1_at11/113+3915792..3919929expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12769.1.S1_at--509--9451Chr03:3891035..3891059 (25 bp)
TCGGCGTCGGAGTTCAAGCAGACGC
LOC_Os03g07700
OsAffx.12769.1.S1_at--525--4011Chr03:3891031..3891055 (25 bp)
CGTCGGAGTTCAAGCAGACGCCGGT
LOC_Os03g07700
OsAffx.12769.1.S1_at--1099--1211Chr03:3891025..3891049 (25 bp)
AGTTCAAGCAGACGCCGGTGGCCGA
LOC_Os03g07700
OsAffx.12769.1.S1_at--1005--4091Chr03:3891003..3891027 (25 bp)
CGACATGCCGGTTGACCCACGCGGG
LOC_Os03g07700
OsAffx.12769.1.S1_at--1142--3891Chr03:3890954..3890978 (25 bp)
CTGGTGTACAGCCTGAACCGGAACA
LOC_Os03g07700
OsAffx.12769.1.S1_at--176--7451Chr03:3890951..3890975 (25 bp)
GTGTACAGCCTGAACCGGAACAGGA
LOC_Os03g07700
OsAffx.12769.1.S1_at--79--3831Chr03:3890942..3890966 (25 bp)
CTGAACCGGAACAGGAGGCTGACGT
LOC_Os03g07700
OsAffx.12769.1.S1_at--752--1771Chr03:3890938..3890962 (25 bp)
ACCGGAACAGGAGGCTGACGTACGC
LOC_Os03g07700
OsAffx.12769.1.S1_at--319--5491Chr03:3890934..3890958 (25 bp)
GAACAGGAGGCTGACGTACGCCGGC
LOC_Os03g07700
OsAffx.12769.1.S1_at--893--5591Chr03:3890885..3890909 (25 bp)
GACAAGGGCGGCGTGAGGTACCAGA
LOC_Os03g07700
OsAffx.12769.1.S1_at--42--3991Chr03:3890874..3890898 (25 bp)
CGTGAGGTACCAGATGGTGGTCACC
LOC_Os03g07700
Target Sequence 
TCGGCGTCGGAGTTCAAGCAGACGCCGGTGGCCGACATGCCGGTTGACCCACGCGGGCCGCTGCTGGGGCGATTCGCCGT
GCTGGTGTACAGCCTGAACCGGAACAGGAGGCTGACGTACGCCGGCGTGTCCCTCGTCGACCAGCACCCGGACAAGGGCG
GCGTGAGGTACCAGATGGTGGTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis