Browse Element(s) Details


OsAffx.12791.1.S1_at

Description tigr:9631.m00837
TID=OsAffx.12791.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0889011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08850Os.11213.1.S1_at11/113+4563543..4565965Leucine Rich Repeat family protein, expressed
LOC_Os03g08860Os.11749.1.S1_at11/113+4571606..4573969FH protein interacting protein FIP1, putative, expressed
LOC_Os03g08870Os.39172.1.S1_at11/113+4575202..4577373expressed protein
LOC_Os03g08880Os.32298.1.S1_at10/113+4578041..4579547expressed protein
LOC_Os03g08890OsAffx.12791.1.S1_at11/113+4582933..4583219hypothetical protein
LOC_Os03g08900NANA3+4586085..4586520expressed protein
LOC_Os03g08910Os.43896.1.S1_at9/113+4593352..4595351MatE family protein, expressed
LOC_Os03g08920Os.37432.1.S1_at11/113+4595895..4597143Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g08930Os.31303.1.S1_at11/113+4608052..4609631Helix-loop-helix DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12791.1.S1_at--419--6251Chr03:4583165..4583189 (25 bp)
GATGGGCCTTGGTGGGTTCAATCTC
LOC_Os03g08890
OsAffx.12791.1.S1_at--773--3611Chr03:4583158..4583182 (25 bp)
CTTGGTGGGTTCAATCTCTCAGTTA
LOC_Os03g08890
OsAffx.12791.1.S1_at--570--7491Chr03:4583154..4583178 (25 bp)
GTGGGTTCAATCTCTCAGTTACCAG
LOC_Os03g08890
OsAffx.12791.1.S1_at--856--6751Chr03:4583150..4583174 (25 bp)
GTTCAATCTCTCAGTTACCAGGCCA
LOC_Os03g08890
OsAffx.12791.1.S1_at--329--6491Chr03:4583137..4583161 (25 bp)
GTTACCAGGCCACACGGCCGAAGGA
LOC_Os03g08890
OsAffx.12791.1.S1_at--917--2491Chr03:4583071..4583095 (25 bp)
AACAGGATGGCCAATTAGCGCAGCT
LOC_Os03g08890
OsAffx.12791.1.S1_at--311--6231Chr03:4583066..4583090 (25 bp)
GATGGCCAATTAGCGCAGCTGCGTC
LOC_Os03g08890
OsAffx.12791.1.S1_at--922--3131Chr03:4583059..4583083 (25 bp)
AATTAGCGCAGCTGCGTCTCACACT
LOC_Os03g08890
OsAffx.12791.1.S1_at--907--1591Chr03:4583050..4583074 (25 bp)
AGCTGCGTCTCACACTTTTGGTCCA
LOC_Os03g08890
OsAffx.12791.1.S1_at--467--10391Chr03:4583035..4583059 (25 bp)
TTTTGGTCCACAAATTTCACGTCAA
LOC_Os03g08890
OsAffx.12791.1.S1_at--485--2251Chr03:4583024..4583048 (25 bp)
AAATTTCACGTCAAAGTTTCATATG
LOC_Os03g08890
Target Sequence 
GATGGGCCTTGGTGGGTTCAATCTCTCAGTTACCAGGCCACACGGCCGAAGGAGGAGTGGGCTGCCGGCCTGAGCGAGGC
CGATCACAAGGCCGAACAGGATGGCCAATTAGCGCAGCTGCGTCTCACACTTTTGGTCCACAAATTTCACGTCAAAGTTT
CATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis