Browse Element(s) Details


OsAffx.12813.1.S1_s_at

Description tigr:9631.m00996
TID=OsAffx.12813.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1082011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10790OsAffx.25044.1.S1_at11/113+5496709..5501502cytochrome b5 domain-containing protein, putative
LOC_Os03g10800Os.5794.1.S1_a_at11/113+5509785..5513434transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10810OsAffx.25045.1.S1_at11/113+5517813..5519436acetyltransferase, GNAT family protein, expressed
LOC_Os03g10820OsAffx.12813.1.S1_s_at11/113+5526246..5530487expressed protein
LOC_Os03g10830OsAffx.25046.1.S1_at11/113+5537093..5537856hypothetical protein
LOC_Os03g10840OsAffx.22433.5.S1_s_at11/113+5546863..5549667hypothetical protein
LOC_Os03g10840OsAffx.22433.5.S1_at5/113+5546863..5549667hypothetical protein
LOC_Os03g10850Os.14106.1.S1_at10/113+5552488..5555549expressed protein
LOC_Os03g10850OsAffx.12815.1.S1_at2/113+5552488..5555549expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12813.1.S1_s_at--1142--8651Chr03:5526863..5526887 (25 bp)
TGTGGTGTCTGAGCTTGCCAAACTT
LOC_Os03g10820
OsAffx.12813.1.S1_s_at--1100--2771Chr03:5526806..5526830 (25 bp)
AAGAGATCTCTTGTCCATGGTCGCA
LOC_Os03g10820
OsAffx.12813.1.S1_s_at--253--6951Chr03:5526617..5526641 (25 bp)
GTAGATCAGTTTGTCTTGCCACATT
LOC_Os03g10820
OsAffx.12813.1.S1_s_at--500--7491Chr03:5526591..5526615 (25 bp)
GTGGTCAACTAACATCACACGGCCT
LOC_Os03g10820
OsAffx.12813.1.S1_s_at--60--4471Chr03:5526570..5526594 (25 bp)
GCCTCATCTTTTCACACTGGAGACT
LOC_Os03g10820
OsAffx.12813.1.S1_s_at--515--7471Chr03:5526509..5526533 (25 bp)
GTGTGAAGTGTGTCCTAATCTGCTT
LOC_Os03g10820
OsAffx.12813.1.S1_s_at--97--9771Chr03:5526494..5526518 (25 bp)
TAATCTGCTTTGATCTCACCGAGTG
LOC_Os03g10820
OsAffx.12813.1.S1_s_at--934--3351Chr03:5526478..5526502 (25 bp)
CACCGAGTGTAGCTGATTCATGTAA
LOC_Os03g10820
OsAffx.12813.1.S1_s_at--569--10031Chr03:5526432..5526456 (25 bp)
TAGAAATGGCCCCTTTTACCTGCAA
LOC_Os03g10820
OsAffx.12813.1.S1_s_at--47--10011Chr03:5526317..5526341 (25 bp)
TAGCTTTGCTGTGTTGCGTGCCTCG
LOC_Os03g10820
OsAffx.12813.1.S1_s_at--345--9191Chr03:5526299..5526323 (25 bp)
TGCCTCGCGTGTTGATGATTGGTGT
LOC_Os03g10820
Target Sequence 
TGTGGTGTCTGAGCTTGCCAAACTTGCAACACAAGAACAAATGTTGTTGGATCAATCAAGAGATCTCTTGTCCATGGTCG
CAGCAATACATGTTAAACAGTGTAGCTTGCAAGCTCATATGCTACAACGAAAGCAAAAGCAGAGCCAGACACGGGTGTAG
ATCAGTTTGTCTTGCCACATTGGTGGTCAACTAACATCACACGGCCTCATCTTTTCACACTGGAGACTGTGCTACAGGTA
ATAAAAGCTGTAACCATTTGTTGGGTGTGAAGTGTGTCCTAATCTGCTTTGATCTCACCGAGTGTAGCTGATTCATGTAA
TTTTTTGAGTGCATATCACCATAGAAATGGCCCCTTTTACCTGCAACAGTTGCTGCAGTGGATGTATACAGAGAACCTAG
TGTTGACCAAGGATGAGCTTTCTGTAGATATGAAAAAAGCTTGTCGTTTGCGTGCCTAGCTTTGCTGTGTTGCGTGCCTC
GCGTGTTGATGATTGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12813.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis