Browse Element(s) Details


OsAffx.12855.1.S1_at

Description tigr:9631.m01364
TID=OsAffx.12855.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1424011/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14220OsAffx.3237.1.S1_at11/113+7693927..7694867hypothetical protein
LOC_Os03g14220OsAffx.24649.2.S1_x_at4/113+7693927..7694867hypothetical protein
LOC_Os03g14230OsAffx.3238.1.S1_at10/113+7699683..7700771hypothetical protein
LOC_Os03g14230Os.17546.1.S1_a_at1/113+7699683..7700771hypothetical protein
LOC_Os03g14240OsAffx.12855.1.S1_at11/113+7716407..7717328NA
LOC_Os03g14250Os.13708.1.S1_at11/113+7720007..7728422expressed protein
LOC_Os03g14260Os.10527.1.S1_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S2_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S3_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.14713.1.S1_at1/113+7733755..7742718Sec7 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12855.1.S1_at--864--2911Chr03:7717138..7717162 (25 bp)
AAGGAGAAAGCAAGGCCACCCTACA
LOC_Os03g14240
OsAffx.12855.1.S1_at--870--971Chr03:7717139..7717163 (25 bp)
AGGAGAAAGCAAGGCCACCCTACAT
LOC_Os03g14240
OsAffx.12855.1.S1_at--406--1411Chr03:7717142..7717166 (25 bp)
AGAAAGCAAGGCCACCCTACATCGG
LOC_Os03g14240
OsAffx.12855.1.S1_at--950--5551Chr03:7717143..7717167 (25 bp)
GAAAGCAAGGCCACCCTACATCGGC
LOC_Os03g14240
OsAffx.12855.1.S1_at--267--2351Chr03:7717144..7717168 (25 bp)
AAAGCAAGGCCACCCTACATCGGCA
LOC_Os03g14240
OsAffx.12855.1.S1_at--226--1491Chr03:7717146..7717170 (25 bp)
AGCAAGGCCACCCTACATCGGCAGG
LOC_Os03g14240
OsAffx.12855.1.S1_at--997--5151Chr03:7717147..7717171 (25 bp)
GCAAGGCCACCCTACATCGGCAGGG
LOC_Os03g14240
OsAffx.12855.1.S1_at--519--3951Chr03:7717173..7717278 (25 bp)
CGGATCTACCGTGTAACGGGTGTGT
LOC_Os03g14240
OsAffx.12855.1.S1_at--638--7951Chr03:7717174..7717279 (25 bp)
GGATCTACCGTGTAACGGGTGTGTT
LOC_Os03g14240
OsAffx.12855.1.S1_at--854--6411Chr03:7717175..7717280 (25 bp)
GATCTACCGTGTAACGGGTGTGTTT
LOC_Os03g14240
OsAffx.12855.1.S1_at--933--111Chr03:7717176..7717281 (25 bp)
ATCTACCGTGTAACGGGTGTGTTTG
LOC_Os03g14240
Target Sequence 
AAGGAGAAAGCAAGGCCACCCTACATCGGCAGGGGCGGATCTACCGTGTAACGGGTGTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis