Browse Element(s) Details


OsAffx.12865.1.S1_at

Description tigr:9631.m01422
TID=OsAffx.12865.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1481011/11myb family transcription factor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14790OsAffx.12864.1.S1_at9/113+8020167..8025808Piwi domain containing protein, expressed
LOC_Os03g14800Os.8513.1.S1_at11/113+8026042..8031600aminotransferase, classes I and II family protein, expressed
LOC_Os03g14810OsAffx.12865.1.S1_at11/113+8040348..8040941myb family transcription factor, putative
LOC_Os03g14820OsAffx.25090.1.S1_at11/113+8043566..8044306hypothetical protein
LOC_Os03g14820OsAffx.9107.1.S1_x_at2/113+8043566..8044306hypothetical protein
LOC_Os03g14830Os.14692.1.S1_at10/113+8046571..8050869phosphomevalonate kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12865.1.S1_at--382--4711Chr03:8040876..8040900 (25 bp)
GCTGGCCATGTACGACCGCGACACG
LOC_Os03g14810
OsAffx.12865.1.S1_at--395--1851Chr03:8040766..8040790 (25 bp)
ACGACTGCGGCAGCATCGAGTCCGG
LOC_Os03g14810
OsAffx.12865.1.S1_at--259--5731Chr03:8040764..8040788 (25 bp)
GACTGCGGCAGCATCGAGTCCGGAA
LOC_Os03g14810
OsAffx.12865.1.S1_at--228--1991Chr03:8040763..8040787 (25 bp)
ACTGCGGCAGCATCGAGTCCGGAAA
LOC_Os03g14810
OsAffx.12865.1.S1_at--892--9131Chr03:8040761..8040785 (25 bp)
TGCGGCAGCATCGAGTCCGGAAACT
LOC_Os03g14810
OsAffx.12865.1.S1_at--496--4691Chr03:8040760..8040784 (25 bp)
GCGGCAGCATCGAGTCCGGAAACTA
LOC_Os03g14810
OsAffx.12865.1.S1_at--990--8231Chr03:8040758..8040782 (25 bp)
GGCAGCATCGAGTCCGGAAACTACG
LOC_Os03g14810
OsAffx.12865.1.S1_at--760--5051Chr03:8040757..8040781 (25 bp)
GCAGCATCGAGTCCGGAAACTACGG
LOC_Os03g14810
OsAffx.12865.1.S1_at--1142--4951Chr03:8040754..8040778 (25 bp)
GCATCGAGTCCGGAAACTACGGCTA
LOC_Os03g14810
OsAffx.12865.1.S1_at--712--3451Chr03:8040753..8040777 (25 bp)
CATCGAGTCCGGAAACTACGGCTAC
LOC_Os03g14810
OsAffx.12865.1.S1_at--750--1931Chr03:8040685..8040709 (25 bp)
ACGGCAATGGCAGGGACAAGAACAA
LOC_Os03g14810
Target Sequence
GCTGGCCATGTACGACCGCGACACGCCGGGGCGGTGGGAGCGCGTGGCGGCGGTGGTCGGCGGGGGGAAGACGGCGGACG
ACGTGAGGCGCCACTTCGACCTCCTCGTCGACGACTGCGGCAGCATCGAGTCCGGAAACTACGGCTACCCCGGCACCGGC
GCCGGCGCCGGCCGCGGCAGCGGCAACGGCAACGGCAATGGCAGGGACAAGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis