Browse Element(s) Details


OsAffx.12867.1.S1_s_at

Description tigr:9631.m01430
TID=OsAffx.12867.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1489011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14840OsAffx.3245.1.S1_at11/113+8066289..8067785CsPK3, putative, expressed
LOC_Os03g14850OsAffx.12866.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14850Os.18922.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14860NANA3+8080625..8081983G-patch domain containing protein, expressed
LOC_Os03g14880Os.49994.1.S1_at11/113+8085393..8087434expressed protein
LOC_Os03g14880Os.49994.1.S2_at11/113+8085393..8087434expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_s_at11/113+8091183..8096795expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_at11/113+8091183..8096795expressed protein
LOC_Os03g14890Os.50208.1.S1_at10/113+8091183..8096795expressed protein
LOC_Os03g14900Os.21188.1.A1_at11/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14900Os.12301.1.S1_at1/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14910Os.11804.1.S1_at11/113+8109465..8113280Tryptophan/tyrosine permease family protein, expressed
LOC_Os03g14920OsAffx.12868.1.S1_at11/113+8114067..8115327hypothetical protein
LOC_Os03g14920OsAffx.22904.1.S1_at1/113+8114067..8115327hypothetical protein
LOC_Os03g14920OsAffx.22904.1.S1_x_at1/113+8114067..8115327hypothetical protein
LOC_Os03g14930NANA3+8120974..8122371retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12867.1.S1_s_at--314--5831Chr03:8093621..8093645 (25 bp)
GACCTGAAAACTGTTGAAGATCCAT
LOC_Os03g14890
OsAffx.12867.1.S1_s_at--145--8991Chr03:8093607..8093631 (25 bp)
TGAAGATCCATTTGATTCCCCTACC
LOC_Os03g14890
OsAffx.12867.1.S1_s_at--727--191Chr03:8093598..8093622 (25 bp)
ATTTGATTCCCCTACCTACAACATA
LOC_Os03g14890
OsAffx.12867.1.S1_s_at--642--2511Chr03:8093579..8093603 (25 bp)
AACATACCTGAGAAGCCAGTGACAT
LOC_Os03g14890
OsAffx.12867.1.S1_s_at--91--5431Chr03:8093568..8093592 (25 bp)
GAAGCCAGTGACATTTGCTGAAGGG
LOC_Os03g14890
OsAffx.12867.1.S1_s_at--635--7591Chr03:8093545..8093569 (25 bp)
GGGCTTCCTACAGTCTTGTAATAGT
LOC_Os03g14890
OsAffx.12867.1.S1_s_at--452--9871Chr03:8093537..8093561 (25 bp)
TACAGTCTTGTAATAGTTGCGGGAC
LOC_Os03g14890
OsAffx.12867.1.S1_s_at--1066--1231Chr03:8093523..8093547 (25 bp)
AGTTGCGGGACTTGGAATTGCAGCA
LOC_Os03g14890
OsAffx.12867.1.S1_s_at--380--1091Chr03:8093499..8093523 (25 bp)
AGTGGCTGGATATGCTGTTTTCAAA
LOC_Os03g14890
OsAffx.12867.1.S1_s_at--291--5591Chr03:8092344..8092368 (25 bp)
GAAATCGTGCAGCTCGGCAGCGCAT
LOC_Os03g14890
OsAffx.12867.1.S1_s_at--649--7011Chr03:8091589..8091613 (25 bp)
GTAAACTTCTATATCCGAGGACCAC
LOC_Os03g14890
Target Sequence 
GACCTGAAAACTGTTGAAGATCCATTTGATTCCCCTACCTACAACATACCTGAGAAGCCAGTGACATTTGCTGAAGGGGC
TTCCTACAGTCTTGTAATAGTTGCGGGACTTGGAATTGCAGCAGTGGCTGGATATGCTGTTTTCAAAGAACTTATATTTG
AACCAAAAGAGTACAAGATTTTTGGAAAAGCGCTAGCAAGAGTACAGAATGACAGTCAGGTTACAGCAAAAATTGGGTAT
CCTGTTACTGGATATGGCAATGAAAGTAGAAATCGTGCAGCTCGGCAGCGCATTCCTAACAAGGTTTGGACAGATGAGGA
CGGTGTTGAACATGTGGAGGTAAACTTCTATATCCGAGGACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12867.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis