Browse Element(s) Details


OsAffx.12933.1.S1_at

Description tigr:9631.m01894
TID=OsAffx.12933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1918011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19150NANA3+10711296..10714341retrotransposon protein, putative, unclassified
LOC_Os03g19160Os.35344.18.S1_x_at11/113+10718699..10723852transposon protein, putative, Mutator sub-class
LOC_Os03g19160Os.35344.3.S1_x_at9/113+10718699..10723852transposon protein, putative, Mutator sub-class
LOC_Os03g19160OsAffx.22940.5.S1_x_at3/113+10718699..10723852transposon protein, putative, Mutator sub-class
LOC_Os03g19170Os.57195.1.S1_at11/113+10727582..10728584expressed protein
LOC_Os03g19180OsAffx.12933.1.S1_at11/113+10729174..10730117hypothetical protein
LOC_Os03g19190Os.52477.1.S1_at11/113+10731625..10738874BRCA1 C Terminus domain containing protein, expressed
LOC_Os03g19200Os.14195.1.S1_at10/113+10751427..10754538TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12933.1.S1_at--440--5071Chr03:10730057..10730081 (25 bp)
GCAGCTGCGGTCATCTTTTGCATGA
LOC_Os03g19180
OsAffx.12933.1.S1_at--449--2431Chr03:10729872..10729896 (25 bp)
AAAAGCGGCTCTTTGCTTCGACAAC
LOC_Os03g19180
OsAffx.12933.1.S1_at--679--4911Chr03:10729741..10729882 (25 bp)
GCTTCGACAACCACACGGTGATCAA
LOC_Os03g19180
OsAffx.12933.1.S1_at--1018--7751Chr03:10729725..10729749 (25 bp)
GGTGATCAACAAGTGCCTGCAGCAA
LOC_Os03g19180
OsAffx.12933.1.S1_at--1132--7271Chr03:10729713..10729737 (25 bp)
GTGCCTGCAGCAAATTGGGATCGAC
LOC_Os03g19180
OsAffx.12933.1.S1_at--452--6391Chr03:10729695..10729719 (25 bp)
GATCGACAGCAACGCGAGGGCTTCA
LOC_Os03g19180
OsAffx.12933.1.S1_at--371--1831Chr03:10729607..10729631 (25 bp)
ACGCCGTGCTTCGAGCACATGTTGA
LOC_Os03g19180
OsAffx.12933.1.S1_at--883--2491Chr03:10729550..10729574 (25 bp)
AACTTCCAGGGATACAGCGCCGGCC
LOC_Os03g19180
OsAffx.12933.1.S1_at--364--4231Chr03:10729507..10729531 (25 bp)
CCGTCTTCCAGATGTCGTGCAGGGT
LOC_Os03g19180
OsAffx.12933.1.S1_at--823--7691Chr03:10729261..10729285 (25 bp)
GGGTAATTCGCTTGTGTCCAGAACC
LOC_Os03g19180
OsAffx.12933.1.S1_at--3--10811Chr03:10729250..10729274 (25 bp)
TTGTGTCCAGAACCGGAAGCGCCGT
LOC_Os03g19180
Target Sequence 
GCAGCTGCGGTCATCTTTTGCATGACAATCCCCTCCTGCAAAGCACAAGATGCAGTTGAGATCGTAGCAAAAGCGGCTCT
TTGCTTCGACAACCACACGGTGATCAACAAGTGCCTGCAGCAAATTGGGATCGACAGCAACGCGAGGGCTTCAACGCAAG
GCGCCGGCGGCGCGGTACTGGACGCGAGCGCGAACGCCAGCGCGGCGCTCTGCGACACGCCGTGCTTCGAGCACATGTTG
ATGATGACGGACTGCATGGACGACATCCTCTCCAACTTCCAGGGATACAGCGCCGGCCTCATCAAGGGCTACCGCGCCGT
CTTCCAGATGTCGTGCAGGGTGGTCACCGCTGCCGCAGCTGGTGGCGGCGGCAGCAGCAGCAGCAGCAATGGCACCGCCA
ACGCCACCGTCGCCGGCGGCGGCGACGCGGACGATCGCCACTCCCCGTCTCATGGCGCGGCGAAGGGTAATTCGCTTGTG
TCCAGAACCGGAAGCGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis