Browse Element(s) Details


OsAffx.12939.2.S1_at

Description tigr:9631.m01943
TID=OsAffx.12939.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1962011/11hypothetical protein
LOC_Os05g341203/11hypothetical protein
LOC_Os02g559301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19590Os.4601.1.S1_a_at11/113+10998964..11007022Phytochrome B, putative, expressed
LOC_Os03g19600Os.11065.1.A1_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19600Os.8570.3.S1_s_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19610Os.18212.1.S1_at11/113+11012355..11014375Pectinesterase family protein, expressed
LOC_Os03g19620OsAffx.12939.2.S1_at11/113+11015747..11016130hypothetical protein
LOC_Os03g19630OsAffx.27626.1.S1_at11/113+11018627..11019196Myb-like DNA-binding domain containing protein
LOC_Os03g19640OsAffx.12941.1.S1_at11/113+11024800..11025308hypothetical protein
LOC_Os03g19650Os.26818.2.S1_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.1.S1_a_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.2.S2_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19660OsAffx.12942.2.S1_at11/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_at10/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_x_at8/113+11034988..11036603hypothetical protein
LOC_Os03g19670Os.51091.1.S1_at11/113+11038498..11040989GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12939.2.S1_at--981--1051Chr03:11015858..11015882 (25 bp)
AGGGTGACCATCTTGGGTGTGTTCA
LOC_Os03g19620
OsAffx.12939.2.S1_at--89--5851Chr03:11015863..11015887 (25 bp)
GACCATCTTGGGTGTGTTCAAGCCA
LOC_Os03g19620
OsAffx.12939.2.S1_at--10--7733Chr05:17609692..17609716 (25 bp)
GGGTGTGTTCAAGCCAGACAAAATT
NONE
OsAffx.12939.2.S1_at--37--2431Chr03:11015891..11015915 (25 bp)
AAAATTAATTGCTCCCCTATGCCTA
LOC_Os03g19620
OsAffx.12939.2.S1_at--38--10154Chr05:17609728..17609752 (25 bp)
TATGCCTACTCATCCTATTCTTCAG
NONE
OsAffx.12939.2.S1_at--458--3737Chr05:17609733..17609757 (25 bp)
CTACTCATCCTATTCTTCAGTGGAT
NONE
OsAffx.12939.2.S1_at--264--3476Chr05:17609750..17609774 (25 bp)
CAGTGGATGGTGAACGACCTGCTAA
NONE
OsAffx.12939.2.S1_at--547--5455Chr04:20229138..20229162 (25 bp)
GAACGACCTGCTAACAATCAATTTT
NONE
OsAffx.12939.2.S1_at--201--371Chr03:11015957..11016038 (25 bp)
ATCAATTTTATCTCTGCAGCACCAG
LOC_Os03g19620
OsAffx.12939.2.S1_at--316--10411Chr03:11015964..11016045 (25 bp)
TTATCTCTGCAGCACCAGTTGAAGG
LOC_Os03g19620
OsAffx.12939.2.S1_at--458--3411Chr03:11016030..11016054 (25 bp)
CAGCACCAGTTGAAGGAGACGCAAT
LOC_Os03g19620
Target Sequence 
AGGGTGACCATCTTGGGTGTGTTCAAGCCAGACAAAATTAATTGCTCCCCTATGCCTACTCATCCTATTCTTCAGTGGAT
GGTGAACGACCTGCTAACAATCAATTTTATCTCTGCAGCACCAGTTGAAGGAGACGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12939.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis