Browse Element(s) Details


OsAffx.12949.1.S1_at

Description tigr:9631.m01976
TID=OsAffx.12949.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g199409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19910OsAffx.25153.1.S1_at11/113+11176061..11176843hypothetical protein
LOC_Os03g19920OsAffx.12948.1.S1_at11/113+11178765..11183846Poly polymerase central domain containing protein, expressed
LOC_Os03g19930Os.35451.1.S1_at11/113+11189599..11193778Adenylosuccinate lyase, putative, expressed
LOC_Os03g19940OsAffx.12949.1.S1_at9/113+11196562..11197196hypothetical protein
LOC_Os03g19950NANA3+11203351..11203830hypothetical protein
LOC_Os03g19960Os.18705.1.S1_a_at11/113+11216619..11220353Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
LOC_Os03g19970Os.22909.1.S1_at10/113+11221095..11226313O-acetyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12949.1.S1_at--983--1511Chr03:11197205..11197229 (25 bp)
AGCAGGTTAATTAGCGGCCGCTCGA
NONE
OsAffx.12949.1.S1_at--639--1611Chr03:11197193..11197217 (25 bp)
AGCGGCCGCTCGATCGACGATATGG
NONE
OsAffx.12949.1.S1_at--719--10591Chr03:11196917..11196941 (25 bp)
TTCTCCATGGTGTGCTGCTTCTTCC
LOC_Os03g19940
OsAffx.12949.1.S1_at--1138--10591Chr03:11196890..11196914 (25 bp)
TTCTGCGGCTGCACGCTATGATCGG
LOC_Os03g19940
OsAffx.12949.1.S1_at--436--9031Chr03:11196881..11196905 (25 bp)
TGCACGCTATGATCGGTGCCACTCC
LOC_Os03g19940
OsAffx.12949.1.S1_at--10--11Chr03:11196850..11196874 (25 bp)
ATATAGGGCGCGCGTACGTACGTAC
LOC_Os03g19940
OsAffx.12949.1.S1_at--691--3171Chr03:11196817..11196841 (25 bp)
AATTGTATATGATCGCTTCCTAGCT
LOC_Os03g19940
OsAffx.12949.1.S1_at--938--511Chr03:11196806..11196830 (25 bp)
ATCGCTTCCTAGCTCTGCTCTGAAT
LOC_Os03g19940
OsAffx.12949.1.S1_at--198--9091Chr03:11196791..11196815 (25 bp)
TGCTCTGAATCTCCCAACTGTTTTT
LOC_Os03g19940
OsAffx.12949.1.S1_at--54--5251Chr03:11196785..11196809 (25 bp)
GAATCTCCCAACTGTTTTTGATTGA
LOC_Os03g19940
OsAffx.12949.1.S1_at--380--6631Chr03:11196732..11196756 (25 bp)
GTTGTCGGTTATTCACTGTGTTCAT
LOC_Os03g19940
Target Sequence 
AGCAGGTTAATTAGCGGCCGCTCGATCGACGATATGGGGGGCAGCCTGGTGTCCATGCTGCGGTGGCCGCCGGACCTCGG
CGTGCCGAGCCTGGCGGCGCTGCTGCCGTCGTCGGCGGCCGGCCACTACGCGGGCGCGCCGGCCCTCCGCGGGTGGCACT
GGCAGCACTGGTGGCCGGAGCGGCTCGGCTCGGCGGTGCGGCGGTGGCCGGAGCTCGTGCAGGACTTTTCCCCCGTCGTG
GACGCCGTGCTCTGGGGCCTCGTCACCGCCATCGAGTCCGTCGCGCTCTTCTCCATGGTGTGCTGCTTCTTCCTCTTCTG
CGGCTGCACGCTATGATCGGTGCCACTCCCCCACCATATAGGGCGCGCGTACGTACGTACGTATGCATAATTGTATATGA
TCGCTTCCTAGCTCTGCTCTGAATCTCCCAACTGTTTTTGATTGATTTTTTTTTTCAGATGATTCTCCATTTTGTTGTCG
GTTATTCACTGTGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis