Browse Element(s) Details


OsAffx.12959.1.S1_at

Description tigr:9631.m02079
TID=OsAffx.12959.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pyruvate kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2088011/11Pyruvate kinase, cytosolic isozyme, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20820Os.47463.1.S1_x_at6/113+11769165..11773944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20820Os.14491.2.S1_x_at5/113+11769165..11773944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20830OsAffx.12957.1.S1_at11/113+11774552..11775088hypothetical protein
LOC_Os03g20840OsAffx.25172.1.S1_at11/113+11777136..11780357NB-ARC domain containing protein, expressed
LOC_Os03g20850OsAffx.26595.1.S1_s_at11/113+11784022..11786638secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os03g20850Os.15776.1.S1_at11/113+11784022..11786638secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os03g20860OsAffx.23885.1.S1_s_at11/113+11787185..11792036expressed protein
LOC_Os03g20860Os.8860.1.S1_at11/113+11787185..11792036expressed protein
LOC_Os03g20860OsAffx.12958.1.S1_at6/113+11787185..11792036expressed protein
LOC_Os03g20870Os.19480.1.S1_at11/113+11795300..11797085Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g20880OsAffx.12959.1.S1_at11/113+11798795..11802273Pyruvate kinase, cytosolic isozyme, putative
LOC_Os03g20890OsAffx.4986.1.S1_at2/113+11810150..11813676transposon protein, putative, Mutator sub-class
LOC_Os03g20900Os.51525.1.S1_at11/113+11817803..11820050transfactor, putative, expressed
LOC_Os03g20910Os.51648.2.S1_at11/113+11824069..11827834Homeobox domain containing protein, expressed
LOC_Os03g20910Os.51648.1.S1_at11/113+11824069..11827834Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12959.1.S1_at--806--5551Chr03:11799294..11799318 (25 bp)
GAAAGCCTGTTGTTACTGCAACCCA
LOC_Os03g20880
OsAffx.12959.1.S1_at--880--3171Chr03:11799258..11799282 (25 bp)
CAATGATTAAATCCCCTTGTCCTAC
LOC_Os03g20880
OsAffx.12959.1.S1_at--842--6951Chr03:11799214..11799238 (25 bp)
GTAGCTAATGCTGTCCTTGATGGAA
LOC_Os03g20880
OsAffx.12959.1.S1_at--483--5031Chr03:11799103..11799127 (25 bp)
GCAGAGTTATACCTGGACTACCCTT
LOC_Os03g20880
OsAffx.12959.1.S1_at--602--6751Chr03:11799060..11799084 (25 bp)
GTTCAGAAGCTCCAGTTCCTCTTAG
LOC_Os03g20880
OsAffx.12959.1.S1_at--231--1671Chr03:11799037..11799061 (25 bp)
AGCCCACTTGAGAGTTTGGCATCAT
LOC_Os03g20880
OsAffx.12959.1.S1_at--669--391Chr03:11799014..11799038 (25 bp)
ATCAGCCGTTCAGACAGCCAATATA
LOC_Os03g20880
OsAffx.12959.1.S1_at--661--2351Chr03:11798986..11799010 (25 bp)
AAAGCTTCACTCATCTTGGTTCTTA
LOC_Os03g20880
OsAffx.12959.1.S1_at--1065--7711Chr03:11798957..11798981 (25 bp)
GGGTGGTACAACTGCAAGGCTCATT
LOC_Os03g20880
OsAffx.12959.1.S1_at--665--71Chr03:11798935..11798959 (25 bp)
ATTGCGAAGTACAGGCCAGCCATGC
LOC_Os03g20880
OsAffx.12959.1.S1_at--62--6211Chr03:11798845..11798869 (25 bp)
GAGGCACCTGCAAGACAGTCTCATT
LOC_Os03g20880
Target Sequence 
GAAAGCCTGTTGTTACTGCAACCCAGATGCTTGAATCAATGATTAAATCCCCTTGTCCTACACGGGCAGAGGCTACTGAT
GTAGCTAATGCTGTCCTTGATGGAACTGACTGCGTGATGTTTAGTGGTGAGACTGCAGCAGGGGCATATCCAGAGTTAGC
AGTGCAGACCATGGCGAATATTTGTTCAAGAGCAGAGTTATACCTGGACTACCCTTTCATTTTCAAGAAACTTAGTTCAG
AAGCTCCAGTTCCTCTTAGCCCACTTGAGAGTTTGGCATCATCAGCCGTTCAGACAGCCAATATATCCAAAGCTTCACTC
ATCTTGGTTCTTACCAGGGGTGGTACAACTGCAAGGCTCATTGCGAAGTACAGGCCAGCCATGCCGGTGCTGTTTGTGGT
TGTTCCAGAACTAAAAGCTGATGATAGTTTTAACTGGACTTGCAGTGATGAGGCACCTGCAAGACAGTCTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis