Browse Element(s) Details


OsAffx.13020.1.S1_at

Description tigr:9631.m02466
TID=OsAffx.13020.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2525011/11hypothetical protein
LOC_Os03g2519011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25190OsAffx.13020.1.S1_at11/113+14375854..14377149F-box domain containing protein
LOC_Os03g25200Os.47463.1.S1_x_at6/113+14380775..14384471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25200Os.14491.2.S1_x_at4/113+14380775..14384471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25210NANA3+14387557..14390889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25220OsAffx.25221.2.S1_s_at11/113+14392390..14393712F-box domain containing protein
LOC_Os03g25240OsAffx.25221.2.S1_s_at11/113+14397827..14399166F-box domain containing protein
LOC_Os03g25250OsAffx.13020.1.S1_at11/113+14401786..14403135hypothetical protein
LOC_Os03g25260OsAffx.13021.1.S1_s_at11/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260Os.55755.1.S1_at4/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260OsAffx.13021.1.S1_at1/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25270Os.2952.2.S1_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270Os.2952.1.S1_x_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270OsAffx.30040.1.S1_at1/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25280Os.2965.1.S1_at11/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25280Os.19737.1.S1_at1/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25289NANA3+14417534..14418374auxin induced protein, putative
LOC_Os03g25300Os.19737.1.S1_at11/113+14424307..14425682Peroxidase family protein, expressed
LOC_Os03g25304NANA3+14425940..14426473Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g25310NANA3+14427400..14428222hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13020.1.S1_at--439--8232Chr03:14376576..14376600 (25 bp)
GGCACGGCCTCTCCTATCGGTGTTC
LOC_Os03g25190
OsAffx.13020.1.S1_at--649--8412Chr03:14376581..14376605 (25 bp)
GGCCTCTCCTATCGGTGTTCGACAT
LOC_Os03g25190
OsAffx.13020.1.S1_at--831--3772Chr03:14376584..14376608 (25 bp)
CTCTCCTATCGGTGTTCGACATGGA
LOC_Os03g25190
OsAffx.13020.1.S1_at--1039--5492Chr03:14376640..14376664 (25 bp)
GAACAATGGGCTCGCCATGGGAACC
LOC_Os03g25190
OsAffx.13020.1.S1_at--999--2972Chr03:14376644..14376668 (25 bp)
AATGGGCTCGCCATGGGAACCTGCC
LOC_Os03g25190
OsAffx.13020.1.S1_at--902--4332Chr03:14376654..14376678 (25 bp)
CCATGGGAACCTGCCGCACATGATG
LOC_Os03g25190
OsAffx.13020.1.S1_at--833--3792Chr03:14376699..14376723 (25 bp)
CTCCGGCAAGCTGTGCGCGTTCGTC
LOC_Os03g25190
OsAffx.13020.1.S1_at--35--3372Chr03:14376879..14376903 (25 bp)
CACCGCGGTGGAGGTGCTACCCGAT
LOC_Os03g25190
OsAffx.13020.1.S1_at--795--6152Chr03:14376973..14376997 (25 bp)
GAGGCTGTGTACAACGTTGGGCGCG
LOC_Os03g25190
OsAffx.13020.1.S1_at--443--2232Chr03:14377049..14377073 (25 bp)
ACAAGGAGTGCATGTTGCCGCGTGA
LOC_Os03g25190
OsAffx.13020.1.S1_at--693--8032Chr03:14377053..14377077 (25 bp)
GGAGTGCATGTTGCCGCGTGAGGTG
LOC_Os03g25190
Target Sequence 
GGCACGGCCTCTCCTATCGGTGTTCGACATGGAACGGGAGGAGTTCCGGCAGATGGACNCCCCCGAACAATGGGCTCGCC
ATGGGAACCTGCCGCACATGATGNGTGTACAGATCGCTCGGCNCTCCGGCAAGCTGTGCGCGTTCGTCNACGAGCCGAGC
GCCAGCGCGTTGGGGATGTGGANGCTCGAGGACTACTCCGACCCGAGCAGCTGGCGGNTGGAGCGGAGNATCGACTACTC
GCGCCACGGCGCCGGCAGCCGGAACNTCGCGCGCACGTTCCGCAACNNGTTCTCGGCGGCCACCACCGCGGTGGAGGTGC
TACCCGATGGNGTCANCGGCNNNGGCGNNGNCGGNGNNGGNGGNGANNANGNNNTCNNGTTCNTGNTCAACCAGTTCGAC
ANGAGGGAGGCTGTGTACAACGTTGGGCGCGNGGCGTGGCGGTGGCGNAGGATTTTGCCACCGNNNACGAGGCGCGTGAT
GNCGCACAAGGAGTGCATGTTGCCGCGTGAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis