Browse Element(s) Details


OsAffx.13041.2.A1_at

Description tigr:9640.m04094
TID=OsAffx.13041.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4175010/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41730Os.2741.4.S1_x_at10/1112+25812587..25818652retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g41740NANA12+25828413..25829279hypothetical protein
LOC_Os12g41750OsAffx.13041.2.A1_at10/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41750Os.54015.1.S1_at1/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41760Os.25093.1.A1_x_at4/1112+25839963..25841948expressed protein
LOC_Os12g41760OsAffx.20082.1.S1_at1/1112+25839963..25841948expressed protein
LOC_Os12g41770OsAffx.32143.1.S1_at11/1112+25844359..25844760hypothetical protein
LOC_Os12g41780Os.33273.1.S1_at11/1112+25849499..25852311glycosyl transferase family 17 protein, putative, expressed
LOC_Os12g41790OsAffx.32144.1.S1_at11/1112+25852605..25853637Gamma-thionins family protein
LOC_Os12g41800Os.8970.1.S1_at11/1112+25855260..25859382VTC2, putative, expressed
LOC_Os12g41810Os.52966.1.S1_at11/1112+25860719..25864435WPP domain associated protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13041.2.A1_at--110--10291Chr12:25836170..25836194 (25 bp)
TTTCGACGGTTGATGCGGGAATCCA
LOC_Os12g41750
OsAffx.13041.2.A1_at--42--1711Chr12:25836026..25836050 (25 bp)
ACCAAGGTGATGCATCCAAAGCCCT
LOC_Os12g41750
OsAffx.13041.2.A1_at--418--3211Chr12:25834557..25834577 (21 bp)
CAAGGCGGCTGGTTTTCTTCAATAA
LOC_Os12g41750
OsAffx.13041.2.A1_at--998--4931Chr12:25834512..25834536 (25 bp)
GCTTGGTGCAAAACTGTGTCGCTGA
LOC_Os12g41750
OsAffx.13041.2.A1_at--621--8671NONE
TGTGTCGCTGAGAAAGCCGCACCCG
NONE
OsAffx.13041.2.A1_at--874--1795Chr04:30235930..30235954 (25 bp)
ACCCGCTGAACATGCCGGTGCAGTT
NONE
OsAffx.13041.2.A1_at--908--8134Chr04:30235982..30236006 (25 bp)
GGACACCGCGATGAGCCCGATGAAC
NONE
OsAffx.13041.2.A1_at--170--1678Chr05:16937644..16937668 (23 bp)
AGCCGTTCCTTGACGCAGTAGTCGA
NONE
OsAffx.13041.2.A1_at--925--8936Chr04:30236026..30236050 (25 bp)
TGACGCAGTAGTCGATGGCCTCCTG
NONE
OsAffx.13041.2.A1_at--434--8531Chr12:25833647..25833671 (25 bp)
TGGAGCGTATGATGGCGTTGCCTTC
LOC_Os12g41750
OsAffx.13041.2.A1_at--95--7751Chr12:25833545..25833569 (25 bp)
GGTGTGGCCGTTTGAGTCCACCACT
LOC_Os12g41750
Target Sequence 
TTTCGACGGTTGATGCGGGAATCCAAGGCTTGAACAAGGTGGTGGAGGAGATCTTGGCAAGGGGCCCGACAATGTCGAGG
AGCACCAAGGTGATGCATCCAAAGCCCTTGCGGCTCAGGAGCGACCCCTGGTCAAGGCGGCTGGTTTTCTTCAATAAAAT
CAAGATGAGAAAGATGAGCTTGGTGCAAAACTGTGTCGCTGAGAAAGCCGCACCCGCTGAACATGCCGGTGCAGTTGAAC
CCGTACGCCACCTCGCCGGTGCCGGACACCGCGATGAGCCCGATGAACCCTTCGTCCAGCCGTTCCTTGACGCAGTAGTC
GATGGCCTCCTGCAGCCCGGCGGCGACGTCGCGCGCCAGCGTGGAGCGTATGATGGCGTTGCCTTCCCCGATCCGATCAA
CGGCGAGTCGCCAATGCGCCCGGTCATCTTGTTCGTCAGCCCGCCCGTGGACATGGCCGCCGCGGTGTGGCCGTTTGAGT
CCACCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13041.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis