Browse Element(s) Details


OsAffx.13054.1.S1_at

Description tigr:9631.m02597
TID=OsAffx.13054.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative pseudouridine synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2644011/11tRNA pseudouridine synthase A family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26390NANA3+15060630..15066767retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26400OsAffx.21897.5.S1_x_at4/113+15067056..15069980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26420OsAffx.13053.1.S1_at11/113+15075879..15076541Zinc finger, C3HC4 type family protein
LOC_Os03g26430Os.11373.1.S1_at11/113+15079319..15081192Aldose 1-epimerase family protein, expressed
LOC_Os03g26440OsAffx.13054.1.S1_at11/113+15085399..15092373tRNA pseudouridine synthase A family protein
LOC_Os03g26450Os.15764.1.S1_at11/113+15093858..15097099F-actin capping protein beta subunit, putative, expressed
LOC_Os03g26460Os.6724.1.S1_at11/113+15097190..15100288expressed protein
LOC_Os03g26460Os.40390.1.A1_x_at1/113+15097190..15100288expressed protein
LOC_Os03g26470OsAffx.13055.1.S1_at11/113+15100623..15101070hypothetical protein
LOC_Os03g26480OsAffx.13056.1.S1_at11/113+15103183..15105820hypothetical protein
LOC_Os03g26490Os.55461.1.S1_at11/113+15106015..15107011expressed protein
LOC_Os03g26500OsAffx.3335.1.S1_at11/113+15110150..15111064expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016439molecular_functiontRNA-pseudouridine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13054.1.S1_at--1109--8911Chr03:15089299..15089323 (25 bp)
TGAGCTGTGGGCCATCACAATCAAG
LOC_Os03g26440
OsAffx.13054.1.S1_at--572--8031Chr03:15089325..15089349 (25 bp)
GGAGTGCCTTCCTGTGGCATCAAGT
LOC_Os03g26440
OsAffx.13054.1.S1_at--873--7531Chr03:15089338..15089362 (25 bp)
GTGGCATCAAGTTCGCTGCATGGTA
LOC_Os03g26440
OsAffx.13054.1.S1_at--226--1611Chr03:15089362..15089386 (25 bp)
AGCTGTGCTATTTCTTATTGGTCAA
LOC_Os03g26440
OsAffx.13054.1.S1_at--436--9491Chr03:15090174..15090198 (25 bp)
TCTGCGATCCTGTCTGTTTGATGAG
LOC_Os03g26440
OsAffx.13054.1.S1_at--862--8671Chr03:15090209..15090573 (25 bp)
TGTGTTCATCAGAGGCCAGTCAAGC
LOC_Os03g26440
OsAffx.13054.1.S1_at--199--411Chr03:15090603..15090627 (25 bp)
ATCAGTATATGCTCCAGGCTGCAAT
LOC_Os03g26440
OsAffx.13054.1.S1_at--445--8711Chr03:15090642..15090662 (21 bp)
TGTCCTGTTTATGTTCTCCAGAGCC
LOC_Os03g26440
OsAffx.13054.1.S1_at--119--10591Chr03:15090655..15090777 (25 bp)
TTCTCCAGAGCCTGATCCATTTGAA
LOC_Os03g26440
OsAffx.13054.1.S1_at--497--6371Chr03:15090766..15090790 (25 bp)
GATCCATTTGAACCTCGTCACAAGA
LOC_Os03g26440
OsAffx.13054.1.S1_at--413--5251Chr03:15090795..15090819 (25 bp)
GAATCATATTCCTCTAATGTCACGA
LOC_Os03g26440
Target Sequence 
TGAGCTGTGGGCCATCACAATCAAGGGGAGTGCCTTCCTGTGGCATCAAGTTCGCTGCATGGTAGCTGTGCTATTTCTTA
TTGGTCAAGGTCTTGAGACACCATGTATAGTTGATTCATTATTGGATATTACCAAAACTCCTAGAAAACCTCAATACAAG
ATGGCATCAGAGATTCCATTGATTCTGCGATCCTGTCTGTTTGATGAGGTCAACTTTATGTGTTCATCAGAGGCCAGTCA
AGCTTTGATTGAGCACTTGAAAGATGAATATCATCAGTATATGCTCCAGGCTGCAATATTTTGTGAGGCATTGTCCTGTT
TATGTTCTCCAGAGCCTGATCCATTTGAACCTCGTCACAAGAAGAGGAATCATATTCCTCTAATGTCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis